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LOCUS AF357627 1269 bp DNA linear VRL 23-MAY-2002
DEFINITION HIV1 isolate 400192l060998 from USA pol protein (pol) gene, partial
cds
ACCESSION AF357627
VERSION AF357627.1 GI:13958758
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1269)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Krogstad,P., Jackson,J.B., Wang,Y.G., Lee,S.,
Wei,L.-J., Cunningham,S., Wantman,M., Wiznia,A., Johnson,G.,
Nachman,S. and Palumbo,P.
TITLE Analysis of human immunodeficiency virus type 1 drug resistance in
children receiving nucleoside analogue reverse-transcriptase
inhibitors plus nevirapine, nelfinavir, or ritonavir (Pediatric
AIDS Clinical Trials Group 377)
JOURNAL J. Infect. Dis. 183 (12), 1732-1738 (2001)
PUBMED 11372025
REFERENCE 2 (bases 1 to 1269)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Krogstad,P., Jackson,J.B., Wang,Y.G., Lee,S.,
Wei,L.-J., Cunningham,S., Wantman,M., Nachman,S., Wiznia,A.,
Johnson,G. and Palumbo,P.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2001) Center for Biostatistics in AIDS Research,
Harvard School of Public Health, 651 Huntington Avenue, Boston, MA
02115-6017, USA
FEATURES Location/Qualifiers
source 1..1269
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="400192l060998"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene <1..>1269
/gene="pol"
CDS <1..>1269
/gene="pol"
/note="protease/reverse transcriptase region"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAK50938.1"
/db_xref="GI:13958759"
/translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQVRIDICGHKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKXSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNESPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKDXWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
PLTKEAELELAENREILKEPVHGVYYDPSKE"
BASE COUNT 498 a 207 c 266 g 288 t 10 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agatagaggg acaactaaag
61 gaagcactat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 caggtacgca tagacatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag gaatatgttg acccagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatctg tacagaaatg
421 gaaaaggaag graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtgttt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagayttcag agaacttaat
541 aagaaaactc aagatttctg ggaagttcaa ttgggaatac cacatccygc agggttaaaa
601 aagaaaarat cagtaacagt actggatgtg ggtgatgcat acttttcagt tcccttagat
661 aaagaattca ggaagtatac tgcatttacc atacctagta taaataatga gtcaccaggr
721 attagatatc agtacaatgt gcttccmcag ggatggaaag ggtcaccagc aatattccaa
781 tgtagtatga caaaaatctt agagcctttt agaaaacaaa atccagacat agtaatctat
841 caatacatgg atgatytgta tgtaggatct gacttagaaa tagggcagca tagagcaaag
901 atagaggaac tgagacarca tctgttaaag tggggattta ccacaccaga caaaaarcat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag agctgccaga aaaagacagm tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatctac gcaggaatta aagtaaagca attatgtaaa
1141 ctccttaggg gagccaaggc actaacagaa gtaattcccc taacaaaaga agcagagcta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagaa
//
last modified: Tue May 31 10:56 2022