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LOCUS	    AF339013		    1070 bp    RNA     linear	VRL 03-JAN-2003
DEFINITION  HIV-1 isolate p99-557 from Belgium gag-pol precursor (pol) gene,
	    partial cds
ACCESSION   AF339013
VERSION     AF339013.1 GI:27475757
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1070)
            Show all sequences for reference 1
  AUTHORS   Snoeck,J., Van Dooren,S., Van Laethem,K., Derdelinckx,I., Van
	    Wijngaerden,E., De Clercq,E. and Vandamme,A.M.
  TITLE     Prevalence and origin of HIV-1 group M subtypes among patients
	    attending a Belgian hospital in 1999
  JOURNAL   Virus Res. 85 (1), 95-107 (2002)
  PUBMED    11955642
REFERENCE   2 (bases 1 to 1070)
            Show all sequences for reference 2
  AUTHORS   Snoeck,J., Van Dooren,S., Derdelinckx,I., Van Laethem,K., Van
	    Wijngaerden,E., De Clercq,E. and Vandamme,A.-M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2001) Microbiology and Immunology, Clinical and
	    Epidemiological Virology, Minderbroederstraat 10, Leuven 3000,
	    Belgium
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Lemey,P., Derdelinckx,I., Rambaut,A., Van Laethem,K., Dumont,S.,
	    Vermeulen,S., Van Wijngaerden,E. and Vandamme,A.M.
  TITLE     Molecular footprint of drug-selective pressure in a human
	    immunodeficiency virus transmission chain
  JOURNAL   J. Virol. 79 (18), 11981-11989 (2005)
  PUBMED    16140774
FEATURES             Location/Qualifiers
     source	     1..1070
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="p99-557"
		     /db_xref="taxon:11676"
		     /country="Belgium"
		     /note="isolated from plasma subtype: C"
     gene	     <1..>1070
		     /gene="pol"
     CDS	     <1..>1070
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="gag-pol precursor"
		     /protein_id="AAO16949.1"
		     /db_xref="GI:27475758"
		     /translation="ITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKPKM
		     IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPISPI
		     ETIPVKLKPGMDGPKVXQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     ESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPEIV
		     IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
		     KWTVQPIQLPEKDSWTVNDIQK"
     mat_peptide     <1..293
		     /gene="pol"
		     /product="protease"
     mat_peptide     294..>1070
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	422 a	 171 c	  222 g    250 t      5 other
ORIGIN
       1 aaatcactct ttggcagcga ccccttgtct caataaaagt agggggccaa ataaaggagg 
      61 ctctcttaga cacaggagca gatgatacag tattagaaga aataaatttg ccaggaaaat 
     121 ggaaaccaaa aatgatagga ggaattggag gttttatcaa agtaagacag tatgatcaaa 
     181 tacttataga aatttgtgga aaaaaggcta taggtacagt attagtaggr cctacacctg 
     241 tcaacataat tggaagaaat atgttgactc agcttggatg cacactaaat tttcccatta 
     301 gtcctattga ractatacca gtaaaattaa agccaggaat ggacggccca aaggttarac 
     361 aatggccatt gacagaagag aaaataaaag cattaacaga aatttgtgaa gagatggaga 
     421 aggaaggaaa aattacaaaa attgggcctg aaaatccata taacactcca gtatttgcca 
     481 taaaaaagaa ggacagtact aagtggagaa aattagtaga tttcagggaa ctcaataaaa 
     541 gaactcaaga cttttgggaa gttcaattag gaataccaca cccagcaggg ttaaaaaaga 
     601 aaaaatcagt aacagtacta gatgtggggg atgcatattt ttcagttcct ttagatgaaa 
     661 gcttcaggaa rtatactgca ttcaccatac ctagtataaa caatgaaaca ccagggatta 
     721 gatatcaata taatgtgctt ccacagggat ggaaaggatc accagcaata tttcagtgta 
     781 gtatgacaaa aatcttagag ccctttaggg cacaaaatcc agaaatagtc atctatcaat 
     841 atatggatga cttatatgta ggatctgact tagaaatagg gcaacataga gcaaaaatag 
     901 aggagttaag agaacattta ttaaartggg gatttaccac accagataag aaacatcaga 
     961 aagaaccccc gtttctttgg atggggtatg aactccatcc tgacaaatgg acagtacagc 
    1021 ctatacagct gccagaaaaa gatagctgga ctgtcaatga catacagaag 
//
last modified: Tue May 31 10:56 2022


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