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LOCUS AF339013 1070 bp RNA linear VRL 03-JAN-2003
DEFINITION HIV-1 isolate p99-557 from Belgium gag-pol precursor (pol) gene,
partial cds
ACCESSION AF339013
VERSION AF339013.1 GI:27475757
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1070)
Show all sequences for reference 1
AUTHORS Snoeck,J., Van Dooren,S., Van Laethem,K., Derdelinckx,I., Van
Wijngaerden,E., De Clercq,E. and Vandamme,A.M.
TITLE Prevalence and origin of HIV-1 group M subtypes among patients
attending a Belgian hospital in 1999
JOURNAL Virus Res. 85 (1), 95-107 (2002)
PUBMED 11955642
REFERENCE 2 (bases 1 to 1070)
Show all sequences for reference 2
AUTHORS Snoeck,J., Van Dooren,S., Derdelinckx,I., Van Laethem,K., Van
Wijngaerden,E., De Clercq,E. and Vandamme,A.-M.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2001) Microbiology and Immunology, Clinical and
Epidemiological Virology, Minderbroederstraat 10, Leuven 3000,
Belgium
REFERENCE 3
Show all sequences for reference 3
AUTHORS Lemey,P., Derdelinckx,I., Rambaut,A., Van Laethem,K., Dumont,S.,
Vermeulen,S., Van Wijngaerden,E. and Vandamme,A.M.
TITLE Molecular footprint of drug-selective pressure in a human
immunodeficiency virus transmission chain
JOURNAL J. Virol. 79 (18), 11981-11989 (2005)
PUBMED 16140774
FEATURES Location/Qualifiers
source 1..1070
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="p99-557"
/db_xref="taxon:11676"
/country="Belgium"
/note="isolated from plasma subtype: C"
gene <1..>1070
/gene="pol"
CDS <1..>1070
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="gag-pol precursor"
/protein_id="AAO16949.1"
/db_xref="GI:27475758"
/translation="ITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKPKM
IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPISPI
ETIPVKLKPGMDGPKVXQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
ESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPEIV
IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPD
KWTVQPIQLPEKDSWTVNDIQK"
mat_peptide <1..293
/gene="pol"
/product="protease"
mat_peptide 294..>1070
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 422 a 171 c 222 g 250 t 5 other
ORIGIN
1 aaatcactct ttggcagcga ccccttgtct caataaaagt agggggccaa ataaaggagg
61 ctctcttaga cacaggagca gatgatacag tattagaaga aataaatttg ccaggaaaat
121 ggaaaccaaa aatgatagga ggaattggag gttttatcaa agtaagacag tatgatcaaa
181 tacttataga aatttgtgga aaaaaggcta taggtacagt attagtaggr cctacacctg
241 tcaacataat tggaagaaat atgttgactc agcttggatg cacactaaat tttcccatta
301 gtcctattga ractatacca gtaaaattaa agccaggaat ggacggccca aaggttarac
361 aatggccatt gacagaagag aaaataaaag cattaacaga aatttgtgaa gagatggaga
421 aggaaggaaa aattacaaaa attgggcctg aaaatccata taacactcca gtatttgcca
481 taaaaaagaa ggacagtact aagtggagaa aattagtaga tttcagggaa ctcaataaaa
541 gaactcaaga cttttgggaa gttcaattag gaataccaca cccagcaggg ttaaaaaaga
601 aaaaatcagt aacagtacta gatgtggggg atgcatattt ttcagttcct ttagatgaaa
661 gcttcaggaa rtatactgca ttcaccatac ctagtataaa caatgaaaca ccagggatta
721 gatatcaata taatgtgctt ccacagggat ggaaaggatc accagcaata tttcagtgta
781 gtatgacaaa aatcttagag ccctttaggg cacaaaatcc agaaatagtc atctatcaat
841 atatggatga cttatatgta ggatctgact tagaaatagg gcaacataga gcaaaaatag
901 aggagttaag agaacattta ttaaartggg gatttaccac accagataag aaacatcaga
961 aagaaccccc gtttctttgg atggggtatg aactccatcc tgacaaatgg acagtacagc
1021 ctatacagct gccagaaaaa gatagctgga ctgtcaatga catacagaag
//
last modified: Tue May 31 10:56 2022