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LOCUS	    AF331700		     297 bp    DNA     linear	VRL 22-MAY-2002
DEFINITION  HIV-1 isolate Pt11 from USA, protease (pol), partial cds
ACCESSION   AF331700
VERSION     AF331700.1 GI:13242144
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2000) Medicine, Division of Infectious Diseases
	    and Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, S-156, Stanford, CA 94305, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Pt11"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: C"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAK16573.1"
		     /db_xref="GI:13242145"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF"
BASE COUNT	110 a	  47 c	   66 g     73 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aagtaggggg acagctaaag 
      61 gaggctctct tagacacagg agccgatgat acagtattag aagaaataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag gcartatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtactagt agggcctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaatttt
//
last modified: Tue May 31 10:56 2022


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