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LOCUS	    AF331686		     750 bp    DNA     linear	VRL 22-MAY-2002
DEFINITION  HIV-1 isolate Pt11 from USA, reverse transcriptase (pol), partial
	    cds
ACCESSION   AF331686
VERSION     AF331686.1 GI:13242116
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 750)
            Show all sequences for reference 1
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Human immunodeficiency virus type 1 reverse-transcriptase and
	    protease subtypes: classification, amino acid mutation patterns,
	    and prevalence in a northern California clinic-based population
  JOURNAL   J. Infect. Dis. 184 (8), 998-1006 (2001)
  PUBMED    11574914
REFERENCE   2 (bases 1 to 750)
            Show all sequences for reference 2
  AUTHORS   Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2000) Medicine, Division of Infectious Diseases
	    and Geographic Medicine, Stanford University Medical Center, 300
	    Pasteur Drive, Room S-156, Stanford, CA 94305, USA
FEATURES             Location/Qualifiers
     source	     1..750
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Pt11"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: C"
     gene	     <1..>750
		     /gene="pol"
     CDS	     <1..>750
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AAK16559.1"
		     /db_xref="GI:13242117"
		     /translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICEEMERE
		     GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRTQNPEXVIYQYVDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPVKD"
BASE COUNT	298 a	 125 c	  155 g    170 t      2 other
ORIGIN
       1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaga 
      61 gtcaaacaat ggccattgac agaagaraaa ataaaagcat taacagaaat ttgtgaagaa 
     121 atggagaggg aaggaaaaat ttcaaaaatt gggcctgaaa atccatataa cactccagta 
     181 tttgctataa aaaagaagga cagcactaag tggagaaaat tagtagattt cagggaactt 
     241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcagggtta 
     301 aaaaagaaaa aatcagtgac agtactggat gtgggggatg catatttctc agttccttta 
     361 gatgaaagct tcaggaaata tactgcattc accataccta gtataaacaa tgaaacacca 
     421 gggattagat atcaatataa tgtgcttcca caaggatgga aaggatcacc agcaatattc 
     481 cagagtagca tgacaaaaat cttagagccc tttaggacac aaaacccaga amtagttatc 
     541 tatcaatatg tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca 
     601 aaaatagagg aattaagaga acatctattg aagtgggggt ttaccacacc agacaagaaa 
     661 catcagaaag aacctccatt tctttggatg gggtatgaac ttcatcctga caaatggaca 
     721 gtacagccta tacagctgcc agtaaaggat 
//
last modified: Tue May 31 10:56 2022


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