View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AF331686 750 bp DNA linear VRL 22-MAY-2002
DEFINITION HIV-1 isolate Pt11 from USA, reverse transcriptase (pol), partial
cds
ACCESSION AF331686
VERSION AF331686.1 GI:13242116
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 750)
Show all sequences for reference 1
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Human immunodeficiency virus type 1 reverse-transcriptase and
protease subtypes: classification, amino acid mutation patterns,
and prevalence in a northern California clinic-based population
JOURNAL J. Infect. Dis. 184 (8), 998-1006 (2001)
PUBMED 11574914
REFERENCE 2 (bases 1 to 750)
Show all sequences for reference 2
AUTHORS Gonzales,M.J., Machekano,R.N. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2000) Medicine, Division of Infectious Diseases
and Geographic Medicine, Stanford University Medical Center, 300
Pasteur Drive, Room S-156, Stanford, CA 94305, USA
FEATURES Location/Qualifiers
source 1..750
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Pt11"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: C"
gene <1..>750
/gene="pol"
CDS <1..>750
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AAK16559.1"
/db_xref="GI:13242117"
/translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICEEMERE
GKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRTQNPEXVIYQYVDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPVKD"
BASE COUNT 298 a 125 c 155 g 170 t 2 other
ORIGIN
1 ccaattagtc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaga
61 gtcaaacaat ggccattgac agaagaraaa ataaaagcat taacagaaat ttgtgaagaa
121 atggagaggg aaggaaaaat ttcaaaaatt gggcctgaaa atccatataa cactccagta
181 tttgctataa aaaagaagga cagcactaag tggagaaaat tagtagattt cagggaactt
241 aataaaagaa ctcaagactt ttgggaagtt caattaggaa taccacaccc agcagggtta
301 aaaaagaaaa aatcagtgac agtactggat gtgggggatg catatttctc agttccttta
361 gatgaaagct tcaggaaata tactgcattc accataccta gtataaacaa tgaaacacca
421 gggattagat atcaatataa tgtgcttcca caaggatgga aaggatcacc agcaatattc
481 cagagtagca tgacaaaaat cttagagccc tttaggacac aaaacccaga amtagttatc
541 tatcaatatg tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca
601 aaaatagagg aattaagaga acatctattg aagtgggggt ttaccacacc agacaagaaa
661 catcagaaag aacctccatt tctttggatg gggtatgaac ttcatcctga caaatggaca
721 gtacagccta tacagctgcc agtaaaggat
//
last modified: Tue May 31 10:56 2022