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LOCUS AF254722 615 bp DNA linear VRL 15-MAR-2002
DEFINITION HIV-1 clone E69.21/ from Tanzania 5' long terminal repeat, complete
sequence
ACCESSION AF254722
VERSION AF254722.1 GI:13897616
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 615)
Show all sequences for reference 1
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE HIV-1 LTR subtype and perinatal transmission
JOURNAL Virology 287 (2), 261-265 (2001)
PUBMED 11531404
REFERENCE 2 (bases 1 to 615)
Show all sequences for reference 2
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE The long terminal repeat of the human immunodeficiency virus type 1
contains determinants associated with perinatal transmission
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 615)
Show all sequences for reference 3
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2000) Department of Immunology and Infectious
Diseases, Harvard AIDS Institute and the Harvard School of Public
Health, 651 Huntington Avenue, Boston, MA 02445, USA
COMMENT Sample date is approximate; study recruitment dates were 4/1995 -
7/1997, and continued 18 mos post-recruitment (Fawzi et al, 1999;
PMID 10839660).
FEATURES Location/Qualifiers
source 1..615
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/clone="E69.21/"
/country="Tanzania"
/note="isolated from peripheral blood mononuclear cells"
LTR 1..615
/note="5'' long terminal repeat (U3 through 5''UTR)"
BASE COUNT 172 a 129 c 170 g 144 t
ORIGIN
1 cttcaggtac ctttaagacc aatgacttac aagggagctt ttgatctcag ctacttttta
61 aaagaaaagg ggggactgga tgggttaatt tactccagaa agagaaaaga gatccttgat
121 ctgtgggtat acaacacaca aggcttcttc cctgattggg atgagtacac accagggcca
181 gggaccaggt tcccactaac atttggatgg tgcttcaagc tagtaccagt tgatccagat
241 gaagtagaga aggctactga gggagagaac aacagcctat tacaccctat atgccaacat
301 ggaatggatg atgaggagag agaaacatta atgtggaagt ttgacagcac cctggcatta
361 aaacacagag cccaagagtt gcatccggag ttctacaaag gctgctgaag actgctgaca
421 cagaagttgc tgacagggac tttccgctgg ggactttcca ggggaggtgt ggtttgggcg
481 gagttgggga gtggctaacc ctcagatgct gcatataagc agctgctttt cgactgtact
541 gggtctctct tggtagacca gatcgagcct gggagctctc tggctagcga gggaacccac
601 tgcttaagcc tcaat
//
last modified: Tue May 31 10:56 2022