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LOCUS AF254713 726 bp DNA linear VRL 15-MAR-2002
DEFINITION HIV-1 clone NT50.1/ from Tanzania 5' long terminal repeat, complete
sequence
ACCESSION AF254713
VERSION AF254713.1 GI:13897607
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 726)
Show all sequences for reference 1
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE HIV-1 LTR subtype and perinatal transmission
JOURNAL Virology 287 (2), 261-265 (2001)
PUBMED 11531404
REFERENCE 2 (bases 1 to 726)
Show all sequences for reference 2
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE The long terminal repeat of the human immunodeficiency virus type 1
contains determinants associated with perinatal transmission
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 726)
Show all sequences for reference 3
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE Direct Submission
JOURNAL Submitted (10-APR-2000) Department of Immunology and Infectious
Diseases, Harvard AIDS Institute and the Harvard School of Public
Health, 651 Huntington Avenue, Boston, MA 02445, USA
COMMENT Sample date is approximate; study recruitment dates were 4/1995 -
7/1997, and continued 18 mos post-recruitment (Fawzi et al, 1999;
PMID 10839660).
FEATURES Location/Qualifiers
source 1..726
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/db_xref="taxon:11676"
/clone="NT50.1/"
/country="Tanzania"
/note="isolated from peripheral blood mononuclear cells"
LTR 1..726
/note="5'' long terminal repeat (U3 through 5''UTR)"
BASE COUNT 188 a 168 c 215 g 155 t
ORIGIN
1 caaggatcct tccctgattg gcagaactac acaccaggac caggggtcag atatccactg
61 acctttggat ggtgcttcaa gctagtgcca gttgacccaa aggaagtgga agaggccaat
121 gaaggagaga acaactgttt gctacatccc atgagcctgc atggaatgga ggatacagac
181 agagaagttt taaagtggaa gtttgacagc agcctggcac gcagacacat ggcccgcgag
241 ctacatccgg agtattacaa agactgctga cacagaaggg actttccgct gggactttcc
301 actggggcgt aacaggagga gtgttctggg cgggactggg agtggccaac cttcagatgc
361 tgcatataag cagctgcttt tcgcccgtac tgggtctctc taggtggacc agatctgagc
421 ctgggagctc tctggctgtc tagggaaccc actgcttaag cctcaataaa gcttgccttg
481 agtgctcaaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaactaga gatccctcag
541 acccagtttg tcagtgtgga aaatctctag cagtggcgcc cgaacaggga cttgaaagcg
601 aaagtaagac cagaggagat ctctcgacgc aggactcggc ttgctgaagt gcacacagca
661 agaggcgaga gcggcgactg gtgagtacgc caatttttat ttgactagcg gaggctagaa
721 ggagag
//
last modified: Tue May 31 10:56 2022