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LOCUS AF239652 698 bp DNA linear VRL 27-SEP-2000
DEFINITION HIV-1 isolate Pair19/infant from Tanzania, 5' long terminal repeat,
complete sequence
ACCESSION AF239652
VERSION AF239652.1 GI:9651904
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 698)
Show all sequences for reference 1
AUTHORS Blackard,J.T., Renjifo,B., Chaplin,B., Msamanga,G., Fawzi,W. and
Essex,M.
TITLE Diversity of the HIV-1 long terminal repeat following
mother-to-child transmission
JOURNAL Virology 274 (2), 402-411 (2000)
PUBMED 10964782
REFERENCE 2 (bases 1 to 698)
Show all sequences for reference 2
AUTHORS Blackard,J.T., Renjifo,B., Chaplin,B., Fawzi,W.W. and Essex,M.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2000) Department of Immunology and Infectious
Diseases, Harvard AIDS Institute and the Harvard School of Public
Health, 651 Huntington Avenue, Boston, MA 02115, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE HIV-1 LTR subtype and perinatal transmission
JOURNAL Virology 287 (2), 261-265 (2001)
PUBMED 11531404
COMMENT Sequences were sampled in 1996-1997 (Renjifo et al,
1998;PMID:9591718). Sample date is approximate; study recruitment
dates were 4/1995 - 7/1997, and continued 18 mos post-recruitment
(Fawzi et al, 1999; PMID 10839660).
FEATURES Location/Qualifiers
source 1..698
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Pair19/infant"
/db_xref="taxon:11676"
/cell_type="peripheral blood mononuclear cells"
/country="Tanzania"
/note="subtype: C"
LTR 1..698
/note="5'' long terminal repeat; U3 through 5'' UTR"
BASE COUNT 185 a 168 c 202 g 143 t
ORIGIN
1 caaggatcct tccctgattg gcagaactcc acaccaggac caggggtcag atatccactg
61 acctttggat ggtgctacaa gctagtacca gttgacccaa gagaagtgga agaggccaat
121 gagggagaga acaacagctt gctacacccc atgagcctgc atggaatgga ggatacagaa
181 agagaagtat taaagtggaa gtttgacagt cacctagcac acaaacacat ggcccgcgag
241 ctacatccgg agtattacaa agactgctga cacagaaggg actttccgct gggactttcc
301 actggggcgt gccaggagga gtggtctggg cgggacgggg gagtggccaa ccctcagatg
361 ctgcatataa gcagctgctt ttcgcctgta ctgggtctct ctaggtagac cagatctgag
421 cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt
481 gagtgctcta agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca
541 gactcttttt gtcagtgagg aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc
601 gaaagtaaga ccagaggaga tctctcgacg caggactcgg cttgctgaaa gtgcacacgg
661 caagaggcga gagcggcggc tggtgagtac gccaaatt
//
last modified: Tue May 31 10:56 2022