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LOCUS	    AF239652		     698 bp    DNA     linear	VRL 27-SEP-2000
DEFINITION  HIV-1 isolate Pair19/infant from Tanzania, 5' long terminal repeat,
	    complete sequence
ACCESSION   AF239652
VERSION     AF239652.1 GI:9651904
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 698)
            Show all sequences for reference 1
  AUTHORS   Blackard,J.T., Renjifo,B., Chaplin,B., Msamanga,G., Fawzi,W. and
	    Essex,M.
  TITLE     Diversity of the HIV-1 long terminal repeat following
	    mother-to-child transmission
  JOURNAL   Virology 274 (2), 402-411 (2000)
  PUBMED    10964782
REFERENCE   2 (bases 1 to 698)
            Show all sequences for reference 2
  AUTHORS   Blackard,J.T., Renjifo,B., Chaplin,B., Fawzi,W.W. and Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2000) Department of Immunology and Infectious
	    Diseases, Harvard AIDS Institute and the Harvard School of Public
	    Health, 651 Huntington Avenue, Boston, MA 02115, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
	    Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
	    Essex,M.
  TITLE     HIV-1 LTR subtype and perinatal transmission
  JOURNAL   Virology 287 (2), 261-265 (2001)
  PUBMED    11531404
COMMENT     Sequences were sampled in 1996-1997 (Renjifo et al,
	    1998;PMID:9591718). Sample date is approximate; study recruitment
	    dates were 4/1995 - 7/1997, and continued 18 mos post-recruitment
	    (Fawzi et al, 1999; PMID 10839660).
FEATURES             Location/Qualifiers
     source	     1..698
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Pair19/infant"
		     /db_xref="taxon:11676"
		     /cell_type="peripheral blood mononuclear cells"
		     /country="Tanzania"
		     /note="subtype: C"
     LTR	     1..698
		     /note="5'' long terminal repeat; U3 through 5'' UTR"
BASE COUNT	185 a	 168 c	  202 g    143 t
ORIGIN
       1 caaggatcct tccctgattg gcagaactcc acaccaggac caggggtcag atatccactg 
      61 acctttggat ggtgctacaa gctagtacca gttgacccaa gagaagtgga agaggccaat 
     121 gagggagaga acaacagctt gctacacccc atgagcctgc atggaatgga ggatacagaa 
     181 agagaagtat taaagtggaa gtttgacagt cacctagcac acaaacacat ggcccgcgag 
     241 ctacatccgg agtattacaa agactgctga cacagaaggg actttccgct gggactttcc 
     301 actggggcgt gccaggagga gtggtctggg cgggacgggg gagtggccaa ccctcagatg 
     361 ctgcatataa gcagctgctt ttcgcctgta ctgggtctct ctaggtagac cagatctgag 
     421 cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt 
     481 gagtgctcta agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca 
     541 gactcttttt gtcagtgagg aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc 
     601 gaaagtaaga ccagaggaga tctctcgacg caggactcgg cttgctgaaa gtgcacacgg 
     661 caagaggcga gagcggcggc tggtgagtac gccaaatt
//
last modified: Tue May 31 10:56 2022


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