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LOCUS	    AF239638		     697 bp    DNA     linear	VRL 27-SEP-2000
DEFINITION  HIV-1 isolate Pair15/mother from Tanzania, 5' long terminal repeat,
	    complete sequence
ACCESSION   AF239638
VERSION     AF239638.1 GI:9651890
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 697)
            Show all sequences for reference 1
  AUTHORS   Blackard,J.T., Renjifo,B., Chaplin,B., Msamanga,G., Fawzi,W. and
	    Essex,M.
  TITLE     Diversity of the HIV-1 long terminal repeat following
	    mother-to-child transmission
  JOURNAL   Virology 274 (2), 402-411 (2000)
  PUBMED    10964782
REFERENCE   2 (bases 1 to 697)
            Show all sequences for reference 2
  AUTHORS   Blackard,J.T., Renjifo,B., Chaplin,B., Fawzi,W.W. and Essex,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2000) Department of Immunology and Infectious
	    Diseases, Harvard AIDS Institute and the Harvard School of Public
	    Health, 651 Huntington Avenue, Boston, MA 02115, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
	    Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
	    Essex,M.
  TITLE     HIV-1 LTR subtype and perinatal transmission
  JOURNAL   Virology 287 (2), 261-265 (2001)
  PUBMED    11531404
COMMENT     Sequences were sampled in 1996-1997 (Renjifo et al,
	    1998;PMID:9591718). Sample date is approximate; study recruitment
	    dates were 4/1995 - 7/1997, and continued 18 mos post-recruitment
	    (Fawzi et al, 1999; PMID 10839660).
FEATURES             Location/Qualifiers
     source	     1..697
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Pair15/mother"
		     /db_xref="taxon:11676"
		     /cell_type="peripheral blood mononuclear cells"
		     /country="Tanzania"
		     /note="subtype: C"
     LTR	     1..697
		     /note="5'' long terminal repeat; U3 through 5'' UTR"
BASE COUNT	181 a	 163 c	  204 g    149 t
ORIGIN
       1 caaggatcct tccctgattg gcagaactac acaccgggac caggggtcag atacccactg 
      61 acctttggat ggtgcttcaa gctagtgcca gtagatccaa gggaagtaga agaggccaat 
     121 gaaggagaaa acaactgttt gctacaccct ataagccagc agggaatgga ggatgatcac 
     181 agagaaatat taatatggaa gtttgacagt caactagcac gcagacacct ggcccgcgag 
     241 ctacatccgg agtattacaa agactgctga cacagaaggg actttccgct gggactttcc 
     301 actggggcgt tccaggagga gtggtctggg cgggactggg gagtggtcaa ccctcagatg 
     361 ctgcatataa gcagctgctt ttcgcttgta ctgggtctct ctaggtggac cagatctgag 
     421 cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt 
     481 gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca 
     541 gaccctttgt ggtagtgtgg aaaatctcta gcagtggcgc ccgaacaggg accagaaagt 
     601 gaaagtaaga ccagaggaga tctctcgacg caggactcgg cttgctgaag tgcactcggc 
     661 aagaggcgag agaggcggct ggtgagtacg ccaaatt
//
last modified: Tue May 31 10:56 2022


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