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LOCUS AF239638 697 bp DNA linear VRL 27-SEP-2000
DEFINITION HIV-1 isolate Pair15/mother from Tanzania, 5' long terminal repeat,
complete sequence
ACCESSION AF239638
VERSION AF239638.1 GI:9651890
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 697)
Show all sequences for reference 1
AUTHORS Blackard,J.T., Renjifo,B., Chaplin,B., Msamanga,G., Fawzi,W. and
Essex,M.
TITLE Diversity of the HIV-1 long terminal repeat following
mother-to-child transmission
JOURNAL Virology 274 (2), 402-411 (2000)
PUBMED 10964782
REFERENCE 2 (bases 1 to 697)
Show all sequences for reference 2
AUTHORS Blackard,J.T., Renjifo,B., Chaplin,B., Fawzi,W.W. and Essex,M.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2000) Department of Immunology and Infectious
Diseases, Harvard AIDS Institute and the Harvard School of Public
Health, 651 Huntington Avenue, Boston, MA 02115, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Blackard,J.T., Renjifo,B., Fawzi,W., Hertzmark,E., Msamanga,G.,
Mwakagile,D., Hunter,D., Spiegelman,D., Sharghi,N., Kagoma,C. and
Essex,M.
TITLE HIV-1 LTR subtype and perinatal transmission
JOURNAL Virology 287 (2), 261-265 (2001)
PUBMED 11531404
COMMENT Sequences were sampled in 1996-1997 (Renjifo et al,
1998;PMID:9591718). Sample date is approximate; study recruitment
dates were 4/1995 - 7/1997, and continued 18 mos post-recruitment
(Fawzi et al, 1999; PMID 10839660).
FEATURES Location/Qualifiers
source 1..697
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="Pair15/mother"
/db_xref="taxon:11676"
/cell_type="peripheral blood mononuclear cells"
/country="Tanzania"
/note="subtype: C"
LTR 1..697
/note="5'' long terminal repeat; U3 through 5'' UTR"
BASE COUNT 181 a 163 c 204 g 149 t
ORIGIN
1 caaggatcct tccctgattg gcagaactac acaccgggac caggggtcag atacccactg
61 acctttggat ggtgcttcaa gctagtgcca gtagatccaa gggaagtaga agaggccaat
121 gaaggagaaa acaactgttt gctacaccct ataagccagc agggaatgga ggatgatcac
181 agagaaatat taatatggaa gtttgacagt caactagcac gcagacacct ggcccgcgag
241 ctacatccgg agtattacaa agactgctga cacagaaggg actttccgct gggactttcc
301 actggggcgt tccaggagga gtggtctggg cgggactggg gagtggtcaa ccctcagatg
361 ctgcatataa gcagctgctt ttcgcttgta ctgggtctct ctaggtggac cagatctgag
421 cccgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt
481 gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca
541 gaccctttgt ggtagtgtgg aaaatctcta gcagtggcgc ccgaacaggg accagaaagt
601 gaaagtaaga ccagaggaga tctctcgacg caggactcgg cttgctgaag tgcactcggc
661 aagaggcgag agaggcggct ggtgagtacg ccaaatt
//
last modified: Tue May 31 10:56 2022