HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF137718		     591 bp    RNA     linear	VRL 08-FEB-2000
DEFINITION  HIV-1 p1p080-333 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   AF137718
VERSION     AF137718.1 GI:6933982
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 591)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 591)
            Show all sequences for reference 2
  AUTHORS   Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
	    Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
	    Huang,X.-L., Fan,Z. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-1999) Department of Microbiology, University of
	    Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..591
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /db_xref="taxon:11676"
		     /clone="p1p080-333"
		     /country="USA"
     gene	     <1..>591
		     /gene="env"
     CDS	     <1..>591
		     /gene="env"
		     /note="gp120; C2-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF31585.1"
		     /db_xref="GI:6934119"
		     /translation="EKEVVIRSENFTDNAKTIIVQLNESVVINCTRPSNNTRRSIAVG
		     PGRAFYATDQIIGDIRKAHCNLSRAAWNNTLGQIVEKLREQFGNKTIVFNRSSGGDPE
		     IVMHSFNCGGEFFYCNTTQLFNSTWNTSTLNNEGSETITLQCRIKQIINMWQEVGKAM
		     YAPPINGQIRCPSNITGLLLTRDGGSNTNNTEIFRPG"
BASE COUNT	236 a	  92 c	  123 g    140 t
ORIGIN
       1 gaaaaagagg tagtaatcag atctgaaaat ttcacggaca atgctaaaac cataatagta 
      61 cagctgaatg agtctgtagt aattaattgt acaagaccca gtaacaatac aagaagaagt 
     121 atagcggtag gaccagggag agcattttat gcaacagatc aaataatagg agatataaga 
     181 aaagcacatt gtaaccttag tagggcagca tggaataaca ctttaggaca gatagttgag 
     241 aaattaagag aacaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggac 
     301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca 
     361 caactgttta atagtacttg gaatactagt actttaaata atgaagggtc agagacgatc 
     421 acactccaat gcagaataaa acaaattata aacatgtggc aggaagtagg aaaagcaatg 
     481 tatgcccctc ccatcaacgg acaaattaga tgtccatcaa atattacagg gctgctatta 
     541 acaagagatg gtggcagtaa cacaaacaat actgaaatct tcagacctgg a
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health