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LOCUS	    AF137681		     606 bp    DNA     linear	VRL 08-FEB-2000
DEFINITION  HIV-1 p1c061-04 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   AF137681
VERSION     AF137681.1 GI:6933945
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 606)
            Show all sequences for reference 1
  AUTHORS   Shankarappa,R., Margolick,J.B., Gange,S., Gange,S.J., Rodrigo,A.G.,
	    Upchurch,D., Farzadegan,H., Gupta,P., Rinaldo,C.R., Learn,G.H.,
	    He,X., Huang,X.-L. and Mullins,J.I.
  TITLE     Consistent viral evolutionary changes associated with the
	    progression of human immunodeficiency virus type 1 infection
  JOURNAL   J. Virol. 73 (12), 10489-10502 (1999)
  PUBMED    10559367
REFERENCE   2 (bases 1 to 606)
            Show all sequences for reference 2
  AUTHORS   Shankarappa,R., Margolick,J.B., Farzadegan,H., Gange,S.J.,
	    Gupta,P., Rinaldo,C.R., Upchurch,D., Rodrigo,A.G., Learn,G.H.,
	    Huang,X.-L., Fan,Z. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-1999) Department of Microbiology, University of
	    Washington, Box 357740, Seattle, WA 98195-7740, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Jensen,M.A., Li,F., van 't Wout,A.B., Nickle,D.C., Shriner,D.,
	    He,H.-X., McLaughlin,S., Shankarappa,R., Margolick,J.B. and
	    Mullins,J.I.
  CONSRTM   Multicenter AIDS Cohort Study
  TITLE     Improved Coreceptor Usage Prediction and Genotypic Monitoring of
	    R5-to-X4 Transition by Motif Analysis of Human Immunodeficiency
	    Virus Type 1 env V3 Loop Sequences
  JOURNAL   J. Virol. 77 (24), 13376-13388 (2003)
  PUBMED    14645592
COMMENT     Sequences AF204402-204670, AF137629-138703, and AY348544-348333:
	    the 3-digit number in each sample name is months
	    post-seroconversion. Sampling years are estimated based on
	    enrollment in 1983-84 incremented by months post-seroconversion.
	    Data on viral load, CD4, and CD8 provided by J. Mullins [JM 3/06]
FEATURES             Location/Qualifiers
     source	     1..606
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /db_xref="taxon:11676"
		     /clone="p1c061-04"
		     /country="USA"
     gene	     <1..>606
		     /gene="env"
     CDS	     <1..>606
		     /gene="env"
		     /note="gp120; C2-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAF31548.1"
		     /db_xref="GI:6934082"
		     /translation="EKEVVIRSENFTDNAKTIIVQLNESVVINCTRPNNNTRRSIHVG
		     PGRAIYATGRIIGDIRQAHCNLSRAAWNNTLNQVVKKLREQFGNKTIVFNRSSGGDPE
		     IVMHSFNCGGEFFYCNTTQLFNSTWNTSTLNNVTEGSEKITLPCRIKQIINMWQEVGK
		     AMYAPPISGQIRCSSNITGLLLTRDGGRGNNTSSTTETFRPG"
BASE COUNT	239 a	  96 c	  128 g    143 t
ORIGIN
       1 gaaaaagagg tagtaattag atctgaaaat ttcacggaca atgctaaaac cataatagta 
      61 cagctgaatg agtctgtagt aattaattgt acaagaccca ataacaatac aagaagaagt 
     121 atacatgtag gaccagggag agcaatttat gcaacaggaa gaataatagg agatataaga 
     181 caagcacatt gtaaccttag tagagcagca tggaataaca ctttaaacca ggtagttaag 
     241 aaattaagag aacaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggac 
     301 ccagaaattg tgatgcacag ttttaattgt ggaggggaat ttttctactg taatacaaca 
     361 caactgttta atagtacttg gaatactagt actttaaata atgttactga agggtcagag 
     421 aagatcacac tcccatgcag aataaaacaa attataaaca tgtggcagga agtaggaaaa 
     481 gcaatgtatg cccctcccat cagtggacaa attagatgtt catcaaatat tacagggctg 
     541 ctattaacaa gagatggtgg caggggcaat aacacgagca gcactaccga aaccttcaga 
     601 cctgga
//
last modified: Tue May 31 10:56 2022


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