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LOCUS	    AF125868		    1017 bp    DNA     linear	VRL 25-JUN-1999
DEFINITION  HIV-1 isolate 222M4D from USA envelope glycoprotein, V1-V5 region
	    (env) gene, partial cds
ACCESSION   AF125868
VERSION     AF125868.1 GI:5199302
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1017)
            Show all sequences for reference 1
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
	    Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Independent evolution of HIV type 1 in different brain regions
  JOURNAL   AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
  PUBMED    10381169
REFERENCE   2 (bases 1 to 1017)
            Show all sequences for reference 2
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
	    Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
	    University of Miami School of Medicine, Elliot Building, Room 2026,
	    1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES             Location/Qualifiers
     source	     1..1017
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="222M4D"
		     /db_xref="taxon:11676"
		     /country="USA:Florida, Miami"
		     /note="first number = patient code; number letter = brain
		     region: F = frontal lobe; T = temporal lobe cortex; G =
		     basal ganglia; M = medial temporal lobe; next number is
		     clone number; final letter indicates DNA (D) or RNA (R)"
     gene	     <1..>1017
		     /gene="env"
     CDS	     <1..>1017
		     /gene="env"
		     /note="V1-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAD40793.1"
		     /db_xref="GI:5199303"
		     /translation="TPLCVTLNCTDLENRNNNDTEIEMKNCSFKITSNMRDKMHTEYA
		     LFYKLDIVQIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCTPPGFALLKCKDKK
		     FNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSKNFSNNANNIIVQLNE
		     SVAINCTRPNNNTRKSIHIAPGRSFYTAGDIIGDIRQAHCNLSETDWNKTLQQVAEKL
		     REQFKAIQIVFSQSSGGDPEIVMHSFNCGGEFFYCNTTPLFNSTWSSNSTISNGTGKS
		     NNITLQCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRDGGNNANGIEVFR
		     LGGEA"
BASE COUNT	396 a	 166 c	  190 g    265 t
ORIGIN
       1 accccactct gtgttacttt gaattgcact gatttggaaa ataggaacaa taatgatact 
      61 gagatagaaa tgaaaaactg ctctttcaag atcacctcaa acatgagaga taaaatgcat 
     121 acggaatatg cactttttta taaacttgat atagtacaaa tagataatga taatactagc 
     181 tataggttaa taagttgtaa cacctcagtc attacacagg cttgtccaaa ggtatccttt 
     241 gaaccaattc ccatacatta ttgtaccccg cctggttttg cacttctaaa gtgcaaggat 
     301 aagaagttca atggaacagg accatgtaaa aatgttagca cagtacaatg tacacatgga 
     361 attaagccag tagtgtcaac tcaactgcta ttaaatggca gtctagcaga agaagaggta 
     421 ataattagat ctaagaattt tagtaacaat gctaataaca taatagtaca gctaaatgaa 
     481 tctgtagcaa ttaattgtac aagacctaac aacaatacaa gaaaaagtat acatatagca 
     541 ccagggagat cattttatac agcaggagat ataataggag atataagaca agcacattgt 
     601 aaccttagtg aaacagactg gaataaaacc ttacaacagg tagccgaaaa attaagagaa 
     661 caatttaagg caatacaaat agtctttagt caatcctcag gaggggaccc agaaattgta 
     721 atgcacagtt ttaattgtgg aggggaattt ttctactgta atacaacacc cctgtttaat 
     781 agtacttgga gtagtaatag tactatttca aatgggactg gaaagtcaaa taatatcaca 
     841 ctccaatgca gaataaaaca aattataaac atgtggcagg aagtaggaaa agcaatgtac 
     901 gcccctccca tcaaaggaca aattagatgt tcatcaaata ttacagggct gatattaaca 
     961 agagatggtg gtaataacgc aaatgggatt gaggtcttca gacttggagg agaagct
//
last modified: Tue May 31 10:56 2022


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