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LOCUS AF125868 1017 bp DNA linear VRL 25-JUN-1999
DEFINITION HIV-1 isolate 222M4D from USA envelope glycoprotein, V1-V5 region
(env) gene, partial cds
ACCESSION AF125868
VERSION AF125868.1 GI:5199302
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1017)
Show all sequences for reference 1
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Independent evolution of HIV type 1 in different brain regions
JOURNAL AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
PUBMED 10381169
REFERENCE 2 (bases 1 to 1017)
Show all sequences for reference 2
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
University of Miami School of Medicine, Elliot Building, Room 2026,
1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES Location/Qualifiers
source 1..1017
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="222M4D"
/db_xref="taxon:11676"
/country="USA:Florida, Miami"
/note="first number = patient code; number letter = brain
region: F = frontal lobe; T = temporal lobe cortex; G =
basal ganglia; M = medial temporal lobe; next number is
clone number; final letter indicates DNA (D) or RNA (R)"
gene <1..>1017
/gene="env"
CDS <1..>1017
/gene="env"
/note="V1-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAD40793.1"
/db_xref="GI:5199303"
/translation="TPLCVTLNCTDLENRNNNDTEIEMKNCSFKITSNMRDKMHTEYA
LFYKLDIVQIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCTPPGFALLKCKDKK
FNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSKNFSNNANNIIVQLNE
SVAINCTRPNNNTRKSIHIAPGRSFYTAGDIIGDIRQAHCNLSETDWNKTLQQVAEKL
REQFKAIQIVFSQSSGGDPEIVMHSFNCGGEFFYCNTTPLFNSTWSSNSTISNGTGKS
NNITLQCRIKQIINMWQEVGKAMYAPPIKGQIRCSSNITGLILTRDGGNNANGIEVFR
LGGEA"
BASE COUNT 396 a 166 c 190 g 265 t
ORIGIN
1 accccactct gtgttacttt gaattgcact gatttggaaa ataggaacaa taatgatact
61 gagatagaaa tgaaaaactg ctctttcaag atcacctcaa acatgagaga taaaatgcat
121 acggaatatg cactttttta taaacttgat atagtacaaa tagataatga taatactagc
181 tataggttaa taagttgtaa cacctcagtc attacacagg cttgtccaaa ggtatccttt
241 gaaccaattc ccatacatta ttgtaccccg cctggttttg cacttctaaa gtgcaaggat
301 aagaagttca atggaacagg accatgtaaa aatgttagca cagtacaatg tacacatgga
361 attaagccag tagtgtcaac tcaactgcta ttaaatggca gtctagcaga agaagaggta
421 ataattagat ctaagaattt tagtaacaat gctaataaca taatagtaca gctaaatgaa
481 tctgtagcaa ttaattgtac aagacctaac aacaatacaa gaaaaagtat acatatagca
541 ccagggagat cattttatac agcaggagat ataataggag atataagaca agcacattgt
601 aaccttagtg aaacagactg gaataaaacc ttacaacagg tagccgaaaa attaagagaa
661 caatttaagg caatacaaat agtctttagt caatcctcag gaggggaccc agaaattgta
721 atgcacagtt ttaattgtgg aggggaattt ttctactgta atacaacacc cctgtttaat
781 agtacttgga gtagtaatag tactatttca aatgggactg gaaagtcaaa taatatcaca
841 ctccaatgca gaataaaaca aattataaac atgtggcagg aagtaggaaa agcaatgtac
901 gcccctccca tcaaaggaca aattagatgt tcatcaaata ttacagggct gatattaaca
961 agagatggtg gtaataacgc aaatgggatt gaggtcttca gacttggagg agaagct
//
last modified: Tue May 31 10:56 2022