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LOCUS	    AF125838		    1042 bp    DNA     linear	VRL 25-JUN-1999
DEFINITION  HIV-1 isolate 144M4R from USA envelope glycoprotein, V1-V5 region
	    (env) gene, partial cds
ACCESSION   AF125838
VERSION     AF125838.1 GI:5199245
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1042)
            Show all sequences for reference 1
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
	    Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Independent evolution of HIV type 1 in different brain regions
  JOURNAL   AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
  PUBMED    10381169
REFERENCE   2 (bases 1 to 1042)
            Show all sequences for reference 2
  AUTHORS   Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
	    Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
	    University of Miami School of Medicine, Elliot Building, Room 2026,
	    1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES             Location/Qualifiers
     source	     1..1042
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="144M4R"
		     /db_xref="taxon:11676"
		     /country="USA:Florida, Miami"
		     /note="first number = patient code; number letter = brain
		     region: F = frontal lobe; T = temporal lobe cortex; G =
		     basal ganglia; M = medial temporal lobe; next number is
		     clone number; final letter indicates DNA (D) or RNA (R)"
     gene	     <1..>1042
		     /gene="env"
     CDS	     <1..>1042
		     /gene="env"
		     /note="V1-V5 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAD40766.1"
		     /db_xref="GI:5199246"
		     /translation="TPLCVTLNCTDWKNSTNTNSSSNTIREIEKGEIKNCSFNITTSI
		     RDKVKKEYALFYRPDVVPIDNDNTSYRLINCNTSTITQACPKVSFEPIPIHYCAPAGF
		     AILKCKDKKFSGKGTCKSVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFMNNV
		     KTIIVQLKEAVEINCTRPSNNTRRSINIGPGRAFYTTEQITGDIRQAHCNISRAKWNS
		     NLQQLVKKLKEQFRNATTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTSKLFNSTWIGN
		     DTNNTEENSTLPITLPCRIRQIINMWQEVGKAMYAPPIRGRISCSSNITGLLLTRDGG
		     TNTNRTETFRLGG"
BASE COUNT	415 a	 172 c	  196 g    259 t
ORIGIN
       1 accccactct gtgttacttt aaattgcact gattggaaga atagtactaa taccaatagt 
      61 agtagtaata ccataagaga gatagagaaa ggagaaataa aaaactgctc tttcaatatt 
     121 accacaagca taagagataa ggtaaagaaa gaatatgcac ttttttatag acctgatgta 
     181 gtaccaatag ataatgataa tactagttat aggttgataa attgtaacac ctcaaccatt 
     241 acacaagcct gtccaaaagt atcctttgag ccaattccca tacattattg tgccccggct 
     301 ggttttgcga ttctaaagtg taaagataag aaattcagtg gaaaaggaac atgtaaatct 
     361 gtcagtacag tacaatgtac acatggaatt aggccagtag tatcaactca actgctgtta 
     421 aatggcagcc tagcagaaga agaagtagta attagatctg acaatttcat gaacaatgtt 
     481 aaaaccataa tagtacagct gaaagaagct gtagaaatta attgtacaag acccagcaac 
     541 aatacaagaa gaagtataaa tataggacca gggagagcat tttatacaac ggaacaaata 
     601 acaggagata taagacaagc acattgtaac attagtagag caaaatggaa tagcaattta 
     661 caacagttag ttaaaaaatt aaaagaacaa tttaggaatg caacaacaat agtctttaat 
     721 caatcctcag gaggggaccc agaaattgta acacacagtt ttaattgtgg aggggaattt 
     781 ttctactgta acacatcaaa actgtttaat agtacttgga ttggaaatga tactaataac 
     841 actgaagaaa atagcacact ccctatcaca ctcccatgca gaataagaca aattataaac 
     901 atgtggcagg aagtaggaaa agcaatgtat gcccctccca tcagaggacg aattagttgc 
     961 tcatcaaata ttacagggct gctattgaca agagatggtg gtactaacac aaataggact 
    1021 gagaccttca gacttggagg ag
//
last modified: Tue May 31 10:56 2022


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