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LOCUS AF125838 1042 bp DNA linear VRL 25-JUN-1999
DEFINITION HIV-1 isolate 144M4R from USA envelope glycoprotein, V1-V5 region
(env) gene, partial cds
ACCESSION AF125838
VERSION AF125838.1 GI:5199245
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1042)
Show all sequences for reference 1
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.T.,
Xin,K.Q., Okuda,K., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Independent evolution of HIV type 1 in different brain regions
JOURNAL AIDS Res. Hum. Retroviruses 15 (9), 811-820 (1999)
PUBMED 10381169
REFERENCE 2 (bases 1 to 1042)
Show all sequences for reference 2
AUTHORS Shapshak,P., Segal,D.M., Crandall,K.A., Fujimura,R.K., Zhang,B.-T.,
Xin,K.-Q., Petito,C.K., Eisdorfer,C. and Goodkin,K.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-1999) Psychiatry and Behavioral Sciences,
University of Miami School of Medicine, Elliot Building, Room 2026,
1800 NW 10th Avenue, Miami, FL 33136, USA
FEATURES Location/Qualifiers
source 1..1042
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="144M4R"
/db_xref="taxon:11676"
/country="USA:Florida, Miami"
/note="first number = patient code; number letter = brain
region: F = frontal lobe; T = temporal lobe cortex; G =
basal ganglia; M = medial temporal lobe; next number is
clone number; final letter indicates DNA (D) or RNA (R)"
gene <1..>1042
/gene="env"
CDS <1..>1042
/gene="env"
/note="V1-V5 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAD40766.1"
/db_xref="GI:5199246"
/translation="TPLCVTLNCTDWKNSTNTNSSSNTIREIEKGEIKNCSFNITTSI
RDKVKKEYALFYRPDVVPIDNDNTSYRLINCNTSTITQACPKVSFEPIPIHYCAPAGF
AILKCKDKKFSGKGTCKSVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFMNNV
KTIIVQLKEAVEINCTRPSNNTRRSINIGPGRAFYTTEQITGDIRQAHCNISRAKWNS
NLQQLVKKLKEQFRNATTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTSKLFNSTWIGN
DTNNTEENSTLPITLPCRIRQIINMWQEVGKAMYAPPIRGRISCSSNITGLLLTRDGG
TNTNRTETFRLGG"
BASE COUNT 415 a 172 c 196 g 259 t
ORIGIN
1 accccactct gtgttacttt aaattgcact gattggaaga atagtactaa taccaatagt
61 agtagtaata ccataagaga gatagagaaa ggagaaataa aaaactgctc tttcaatatt
121 accacaagca taagagataa ggtaaagaaa gaatatgcac ttttttatag acctgatgta
181 gtaccaatag ataatgataa tactagttat aggttgataa attgtaacac ctcaaccatt
241 acacaagcct gtccaaaagt atcctttgag ccaattccca tacattattg tgccccggct
301 ggttttgcga ttctaaagtg taaagataag aaattcagtg gaaaaggaac atgtaaatct
361 gtcagtacag tacaatgtac acatggaatt aggccagtag tatcaactca actgctgtta
421 aatggcagcc tagcagaaga agaagtagta attagatctg acaatttcat gaacaatgtt
481 aaaaccataa tagtacagct gaaagaagct gtagaaatta attgtacaag acccagcaac
541 aatacaagaa gaagtataaa tataggacca gggagagcat tttatacaac ggaacaaata
601 acaggagata taagacaagc acattgtaac attagtagag caaaatggaa tagcaattta
661 caacagttag ttaaaaaatt aaaagaacaa tttaggaatg caacaacaat agtctttaat
721 caatcctcag gaggggaccc agaaattgta acacacagtt ttaattgtgg aggggaattt
781 ttctactgta acacatcaaa actgtttaat agtacttgga ttggaaatga tactaataac
841 actgaagaaa atagcacact ccctatcaca ctcccatgca gaataagaca aattataaac
901 atgtggcagg aagtaggaaa agcaatgtat gcccctccca tcagaggacg aattagttgc
961 tcatcaaata ttacagggct gctattgaca agagatggtg gtactaacac aaataggact
1021 gagaccttca gacttggagg ag
//
last modified: Tue May 31 10:56 2022