HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AF085109		     297 bp    RNA     linear	VRL 13-APR-2001
DEFINITION  HIV-1 isolate PCCPROT24 from USA, protease (pol) gene, partial cds
ACCESSION   AF085109
VERSION     AF085109.1 GI:6179764
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 297)
            Show all sequences for reference 1
  AUTHORS   Zolopa,A.R., Shafer,R.W., Warford,A., Montoya,J.G., Hsu,P.,
	    Katzenstein,D., Merigan,T.C. and Efron,B.
  TITLE     HIV-1 genotypic resistance patterns predict response to
	    saquinavir-ritonavir therapy in patients in whom previous protease
	    inhibitor therapy had failed
  JOURNAL   Ann. Intern. Med. 131 (11), 813-821 (1999)
  PUBMED    10610625
REFERENCE   2 (bases 1 to 297)
            Show all sequences for reference 2
  AUTHORS   Shafer,R.W., Zolopa,A.R., Warford,A., Montoya,J.G., Katzenstein,D.,
	    Hsu,P.T., Merigan,T.C. and Efron,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-1998) Division of Infectious Diseases, Stanford
	    University Medical Center, Room S-156, Stanford, CA 94305, USA
FEATURES             Location/Qualifiers
     source	     1..297
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="PCCPROT24"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="AZT, DDC, D4T, 3TC, SQV, IDV, NFV"
     gene	     <1..>297
		     /gene="pol"
     CDS	     <1..>297
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAF05651.1"
		     /db_xref="GI:6179818"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADNTVLEDINLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF"
BASE COUNT	110 a	  46 c	   65 g     75 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa aggtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagataat acagtattag aagacataaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccya tagaaatatg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaatttt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health