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LOCUS	    KT124439		    1518 bp    RNA     linear	VRL 27-JUL-2015
DEFINITION  HIV-1 isolate 2012-M6 from India gag protein (gag) and pol protein
	    (pol) genes, partial cds
ACCESSION   KT124439
VERSION     KT124439.1 GI:902279799
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1518)
            Show all sequences for reference 1
  AUTHORS   Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
	    and Ranga,U.
  TITLE     Immune Escape in the chronic phase of Subtype C HIV-1 infection in
	    the Indian Clinical cohort
  JOURNAL   Unpublished
REFERENCE   2 (bases 1 to 1518)
            Show all sequences for reference 2
  AUTHORS   Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
	    JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
	    Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
	    Ranga,U.
  TITLE     The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
	    drug-naive subjects of India and South Africa.
  JOURNAL   BMC. Infect. Dis.. 17(1); 95 (2017)
  PUBMED    28118816
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code NLR2014 Patient sex F
	    Patient age 28 Culture method Uncultured Sample tissue plasma
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1518
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2012-M6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="28-Sep-2011"
		     /subtype="C"
     gene	     1..>1518
		     /gene="gag"
     CDS	     1..>1518
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AKR75194.1"
		     /db_xref="GI:902279800"
		     /translation="MGARASILRGGKLDKWEKIRLRPGGKKHYRLKHLVWASRELERF
		     ALNPGLLETSEGCKQIMQQLQPALQTGTEELRSLYNTVATLYCVHAGIEVQDTKNALD
		     KIEEEQNKSQQKTRQAKEATDGKVSQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEK
		     AFSPEIIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAADWDRLHPVHA
		     GPNAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGEIYKRWIILGLNKIVRMYS
		     PVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRA
		     LGPGASLEEMMTACQGVGGPGHKARVLAEAMSQVNNNVLMQRSNFKGPKRIVKCFNCG
		     KEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPE
		     PTAPLAESFRNRPEPTAPPAESFRFEEITPTLKQETKDREPLTSLKSLFGSDPLSQ"
     gene	     <1284..>1518
		     /gene="pol"
     CDS	     <1284..>1518
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AKR75195.1"
		     /db_xref="GI:902279801"
		     /translation="FFRENLAFPQGKAREFPPEQTRANSPTSRELQEQTRANSPARRE
		     LQVRGDNPHSEAGDKRQGTLNFPQITLWQRPLVS"
BASE COUNT	555 a	 301 c	  370 g    292 t
ORIGIN
       1 atgggtgcga gagcgtcaat attaagaggg ggaaaattag ataaatggga aaaaattagg 
      61 ttaaggccag ggggaaagaa acactatagg ctaaaacatc tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacaaata 
     181 atgcaacagc tgcaaccagc tcttcagaca gggacagagg aacttaggtc attatacaac 
     241 acagtagcaa ctctctattg tgtacatgca ggaatagagg tacaagacac taagaatgcc 
     301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacggca ggcaaaagag 
     361 gcgactgacg gaaaggtcag tcaaaactat cctatagtgc aaaatctcca agggcaaatg 
     421 gtacaccagg ccctatcacc tagaactttg aatgcatggg taaaggtaat agaggagaag 
     481 gcttttagcc cagagataat acccatgttt acagcattat cagaaggagc cactccacaa 
     541 gatttaaaca ccatgttaaa tacagtagga ggacatcaag cagctatgca aatgttaaaa 
     601 gatactatca acgaagaagc tgcagattgg gataggttac atccagtaca tgcagggcct 
     661 aatgcaccag gccagatgag agaaccaagg ggaagtgaca tagcaggaac tactagtacc 
     721 cttcaggaac aaattgcatg gatgacaaat aacccacctg ttccagtagg agagatctat 
     781 aaaaggtgga taattctggg gttaaataaa atagtaagaa tgtatagccc tgtcagcatt 
     841 ttggacataa aacaagggcc aaaggaaccc tttagagact atgtagaccg gttctttaaa 
     901 accttaagag ctgaacaagc tacacaagag gtaaaaaatt ggatgacaga caccttgttg 
     961 gtccaaaatg cgaacccaga ttgtaagacc attttaagag cattaggacc aggggcttca 
    1021 ttagaagaga tgatgacagc atgtcaggga gtgggaggac ctggccacaa agcaagagtg 
    1081 ttggctgagg caatgagcca agtaaacaac aatgtactga tgcagagaag caattttaaa 
    1141 ggtcctaaaa gaattgttaa atgtttcaac tgtggcaagg aagggcacat agccaaaaat 
    1201 tgcagggccc ctaggaaaaa aggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa 
    1261 gactgtactg agaggcaggc taatttttta gggaaaattt ggccttccca caagggaagg 
    1321 ccagggaatt tcctccagaa cagacccgag ccaacagccc cactagcaga gagcttcagg 
    1381 aacagaccag agccaacagc cccgcccgca gagagcttca ggttcgagga gataaccccc 
    1441 actctgaagc aggagacaaa agacagggaa cccttaactt ccctcaaatc actctttggc 
    1501 agcgacccct tgtctcaa
//
last modified: Tue May 31 10:56 2022


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