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LOCUS KT124439 1518 bp RNA linear VRL 27-JUL-2015
DEFINITION HIV-1 isolate 2012-M6 from India gag protein (gag) and pol protein
(pol) genes, partial cds
ACCESSION KT124439
VERSION KT124439.1 GI:902279799
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1518)
Show all sequences for reference 1
AUTHORS Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
and Ranga,U.
TITLE Immune Escape in the chronic phase of Subtype C HIV-1 infection in
the Indian Clinical cohort
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1518)
Show all sequences for reference 2
AUTHORS Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE 3
Show all sequences for reference 3
AUTHORS Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
Ranga,U.
TITLE The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
drug-naive subjects of India and South Africa.
JOURNAL BMC. Infect. Dis.. 17(1); 95 (2017)
PUBMED 28118816
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code NLR2014 Patient sex F
Patient age 28 Culture method Uncultured Sample tissue plasma
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1518
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2012-M6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="28-Sep-2011"
/subtype="C"
gene 1..>1518
/gene="gag"
CDS 1..>1518
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AKR75194.1"
/db_xref="GI:902279800"
/translation="MGARASILRGGKLDKWEKIRLRPGGKKHYRLKHLVWASRELERF
ALNPGLLETSEGCKQIMQQLQPALQTGTEELRSLYNTVATLYCVHAGIEVQDTKNALD
KIEEEQNKSQQKTRQAKEATDGKVSQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEK
AFSPEIIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAADWDRLHPVHA
GPNAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGEIYKRWIILGLNKIVRMYS
PVSILDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRA
LGPGASLEEMMTACQGVGGPGHKARVLAEAMSQVNNNVLMQRSNFKGPKRIVKCFNCG
KEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPE
PTAPLAESFRNRPEPTAPPAESFRFEEITPTLKQETKDREPLTSLKSLFGSDPLSQ"
gene <1284..>1518
/gene="pol"
CDS <1284..>1518
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AKR75195.1"
/db_xref="GI:902279801"
/translation="FFRENLAFPQGKAREFPPEQTRANSPTSRELQEQTRANSPARRE
LQVRGDNPHSEAGDKRQGTLNFPQITLWQRPLVS"
BASE COUNT 555 a 301 c 370 g 292 t
ORIGIN
1 atgggtgcga gagcgtcaat attaagaggg ggaaaattag ataaatggga aaaaattagg
61 ttaaggccag ggggaaagaa acactatagg ctaaaacatc tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg taaacaaata
181 atgcaacagc tgcaaccagc tcttcagaca gggacagagg aacttaggtc attatacaac
241 acagtagcaa ctctctattg tgtacatgca ggaatagagg tacaagacac taagaatgcc
301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacggca ggcaaaagag
361 gcgactgacg gaaaggtcag tcaaaactat cctatagtgc aaaatctcca agggcaaatg
421 gtacaccagg ccctatcacc tagaactttg aatgcatggg taaaggtaat agaggagaag
481 gcttttagcc cagagataat acccatgttt acagcattat cagaaggagc cactccacaa
541 gatttaaaca ccatgttaaa tacagtagga ggacatcaag cagctatgca aatgttaaaa
601 gatactatca acgaagaagc tgcagattgg gataggttac atccagtaca tgcagggcct
661 aatgcaccag gccagatgag agaaccaagg ggaagtgaca tagcaggaac tactagtacc
721 cttcaggaac aaattgcatg gatgacaaat aacccacctg ttccagtagg agagatctat
781 aaaaggtgga taattctggg gttaaataaa atagtaagaa tgtatagccc tgtcagcatt
841 ttggacataa aacaagggcc aaaggaaccc tttagagact atgtagaccg gttctttaaa
901 accttaagag ctgaacaagc tacacaagag gtaaaaaatt ggatgacaga caccttgttg
961 gtccaaaatg cgaacccaga ttgtaagacc attttaagag cattaggacc aggggcttca
1021 ttagaagaga tgatgacagc atgtcaggga gtgggaggac ctggccacaa agcaagagtg
1081 ttggctgagg caatgagcca agtaaacaac aatgtactga tgcagagaag caattttaaa
1141 ggtcctaaaa gaattgttaa atgtttcaac tgtggcaagg aagggcacat agccaaaaat
1201 tgcagggccc ctaggaaaaa aggctgttgg aaatgtggaa aggaaggaca ccaaatgaaa
1261 gactgtactg agaggcaggc taatttttta gggaaaattt ggccttccca caagggaagg
1321 ccagggaatt tcctccagaa cagacccgag ccaacagccc cactagcaga gagcttcagg
1381 aacagaccag agccaacagc cccgcccgca gagagcttca ggttcgagga gataaccccc
1441 actctgaagc aggagacaaa agacagggaa cccttaactt ccctcaaatc actctttggc
1501 agcgacccct tgtctcaa
//
last modified: Tue May 31 10:56 2022