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LOCUS	    KT124451		    1464 bp    RNA     linear	VRL 27-JUL-2015
DEFINITION  HIV-1 isolate 2018-M12 from India gag protein (gag) and pol protein
	    (pol) genes, partial cds
ACCESSION   KT124451
VERSION     KT124451.1 GI:902279835
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1464)
            Show all sequences for reference 1
  AUTHORS   Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
	    and Ranga,U.
  TITLE     Immune Escape in the chronic phase of Subtype C HIV-1 infection in
	    the Indian Clinical cohort
  JOURNAL   Unpublished
REFERENCE   2 (bases 1 to 1464)
            Show all sequences for reference 2
  AUTHORS   Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
	    JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
	    Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
	    Ranga,U.
  TITLE     The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
	    drug-naive subjects of India and South Africa.
  JOURNAL   BMC. Infect. Dis.. 17(1); 95 (2017)
  PUBMED    28118816
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code NLR2018 Patient sex F
	    Patient age 35 Culture method Uncultured Sample tissue plasma
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1464
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2018-M12"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="28-Sep-2011"
		     /subtype="C"
     gene	     1..>1464
		     /gene="gag"
     CDS	     1..>1464
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AKR75218.1"
		     /db_xref="GI:902279836"
		     /translation="MGARASVLRGGKLDKWERIRLRPGGKKHYQLKHIVWASRELERF
		     ALNPCLLETAEGCKQIIKQLYPALQTGTEEFKSLYNTVATLYCVHAGIEIKDTKEALD
		     KIEEEQKKCQQKTPQADGKISQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEKAFSP
		     EVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPAQAGPIA
		     PGQIRDPRGSDIAGTTSTLQEQITWMTGNPPIPVGDIYKRWIIMGLNKIVRMYSPVSI
		     LDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKNILRALGPG
		     VSVEEMMTAFQGVGGPRPKARVLVEAMSQANSSIMMQRGNFKGFKRTIKCFRCGKEGH
		     FSRNCRAPRKKGCWKCGKEGHQMKVCIAWQGNLLGKIWPSLKGRPGNFVQIRPEPTAP
		     PAESFRFEETTPSQKHDPFDGKPLSSLKSLFDNDPLSQ"
     gene	     <1272..1445
		     /gene="pol"
     CDS	     <1272..1445
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AKR75219.1"
		     /db_xref="GI:902279837"
		     /translation="SFRENLAFPQGEARKFCPDQTRAYSPTSRELQVRGDNPLSEARP
		     LRRETLIFPQITL"
BASE COUNT	516 a	 289 c	  360 g    299 t
ORIGIN
       1 atgggtgcga gagcgtcagt attacgcggg ggaaaattag ataaatggga aagaattagg 
      61 ttaaggccag ggggaaagaa acactatcag ctaaaacaca tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa cccttgcctt ttagaaacag cagaaggctg taaacaaata 
     181 ataaaacagc tatatccagc tcttcagaca ggaacagagg aatttaaatc cttatacaac 
     241 accgtagcaa ctctctattg cgtacatgca gggatagaga taaaagacac caaagaagcc 
     301 ttagacaaga tagaggaaga acaaaagaaa tgtcagcaga aaacaccgca ggctgacggg 
     361 aagatcagtc aaaattatcc tatagtgcag aacttgcaag ggcaaatggt acaccaggcc 
     421 ctatcaccta gaactttgaa tgcatgggta aaagtaatag aggagaaggc ttttagccca 
     481 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccacaaga tttaaacacc 
     541 atgttaaata cagtaggggg gcatcaagca gccatgcaaa tgttaaaaga taccatcaat 
     601 gaagaggctg cagaatggga taggttacac ccagcacagg cagggcctat tgcaccaggc 
     661 cagataagag acccaagggg aagtgacata gcaggaacta ctagtaccct tcaggaacaa 
     721 ataacatgga tgacaggtaa cccacctatt ccagtgggag acatctataa aagatggata 
     781 attatggggc taaataaaat agtgagaatg tatagccctg tcagcatttt ggacataaaa 
     841 caagggccaa aggaaccctt tagagactat gtagaccggt tctttaaaac tttaagagcc 
     901 gaacaagcta cacaagaggt aaaaaattgg atgacagaca ccttgttggt tcaaaatgcg 
     961 aacccagatt gtaagaacat tttaagagca ttaggaccag gggtttcagt agaagagatg 
    1021 atgacagcat ttcagggagt gggagggcct cgccccaaag ccagagtgtt ggttgaggca 
    1081 atgagtcaag caaacagcag cataatgatg cagagaggta attttaaagg ttttaaaaga 
    1141 actattaaat gtttcaggtg tggcaaggaa gggcactttt ccagaaattg cagggcccct 
    1201 aggaaaaagg gctgttggaa gtgtggaaag gaaggacacc aaatgaaagt ttgtattgcg 
    1261 tggcagggta atcttttagg gaaaatttgg ccttccctca aggggaggcc aggaaatttt 
    1321 gtccagatca gaccagagcc tacagcccca ccagcagaga gcttcaggtt cgaggagaca 
    1381 accccctctc agaagcacga ccccttcgac gggaaaccct tatcttccct caaatcactc 
    1441 tttgacaacg accccttgtc tcaa
//
last modified: Tue May 31 10:56 2022


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