View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS KT124451 1464 bp RNA linear VRL 27-JUL-2015
DEFINITION HIV-1 isolate 2018-M12 from India gag protein (gag) and pol protein
(pol) genes, partial cds
ACCESSION KT124451
VERSION KT124451.1 GI:902279835
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1464)
Show all sequences for reference 1
AUTHORS Sharma,S., Aralaguppe,S., Saravanan,S., Murugavel,K., Solomon,S.
and Ranga,U.
TITLE Immune Escape in the chronic phase of Subtype C HIV-1 infection in
the Indian Clinical cohort
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1464)
Show all sequences for reference 2
AUTHORS Sharma,S., Aralaguppe,S., Murugavel,K., Solomon,S. and Ranga,U.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2015) Molecular Biology and Genetics Unit,
JNCASR, Sri Ram Pura Cross, Bangalore, Karnataka 560064, India
REFERENCE 3
Show all sequences for reference 3
AUTHORS Sharma,S., Aralaguppe,S.G., Abrahams,M.-R., Williamson,C., Gray,C.,
Balakrishnan,P., Saravanan,S., Murugavel,K.G., Solomon,S. and
Ranga,U.
TITLE The PTAP sequence duplication in HIV-1 subtype C Gag p6 in
drug-naive subjects of India and South Africa.
JOURNAL BMC. Infect. Dis.. 17(1); 95 (2017)
PUBMED 28118816
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code NLR2018 Patient sex F
Patient age 35 Culture method Uncultured Sample tissue plasma
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1464
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2018-M12"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="28-Sep-2011"
/subtype="C"
gene 1..>1464
/gene="gag"
CDS 1..>1464
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AKR75218.1"
/db_xref="GI:902279836"
/translation="MGARASVLRGGKLDKWERIRLRPGGKKHYQLKHIVWASRELERF
ALNPCLLETAEGCKQIIKQLYPALQTGTEEFKSLYNTVATLYCVHAGIEIKDTKEALD
KIEEEQKKCQQKTPQADGKISQNYPIVQNLQGQMVHQALSPRTLNAWVKVIEEKAFSP
EVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPAQAGPIA
PGQIRDPRGSDIAGTTSTLQEQITWMTGNPPIPVGDIYKRWIIMGLNKIVRMYSPVSI
LDIKQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKNILRALGPG
VSVEEMMTAFQGVGGPRPKARVLVEAMSQANSSIMMQRGNFKGFKRTIKCFRCGKEGH
FSRNCRAPRKKGCWKCGKEGHQMKVCIAWQGNLLGKIWPSLKGRPGNFVQIRPEPTAP
PAESFRFEETTPSQKHDPFDGKPLSSLKSLFDNDPLSQ"
gene <1272..1445
/gene="pol"
CDS <1272..1445
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AKR75219.1"
/db_xref="GI:902279837"
/translation="SFRENLAFPQGEARKFCPDQTRAYSPTSRELQVRGDNPLSEARP
LRRETLIFPQITL"
BASE COUNT 516 a 289 c 360 g 299 t
ORIGIN
1 atgggtgcga gagcgtcagt attacgcggg ggaaaattag ataaatggga aagaattagg
61 ttaaggccag ggggaaagaa acactatcag ctaaaacaca tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa cccttgcctt ttagaaacag cagaaggctg taaacaaata
181 ataaaacagc tatatccagc tcttcagaca ggaacagagg aatttaaatc cttatacaac
241 accgtagcaa ctctctattg cgtacatgca gggatagaga taaaagacac caaagaagcc
301 ttagacaaga tagaggaaga acaaaagaaa tgtcagcaga aaacaccgca ggctgacggg
361 aagatcagtc aaaattatcc tatagtgcag aacttgcaag ggcaaatggt acaccaggcc
421 ctatcaccta gaactttgaa tgcatgggta aaagtaatag aggagaaggc ttttagccca
481 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccacaaga tttaaacacc
541 atgttaaata cagtaggggg gcatcaagca gccatgcaaa tgttaaaaga taccatcaat
601 gaagaggctg cagaatggga taggttacac ccagcacagg cagggcctat tgcaccaggc
661 cagataagag acccaagggg aagtgacata gcaggaacta ctagtaccct tcaggaacaa
721 ataacatgga tgacaggtaa cccacctatt ccagtgggag acatctataa aagatggata
781 attatggggc taaataaaat agtgagaatg tatagccctg tcagcatttt ggacataaaa
841 caagggccaa aggaaccctt tagagactat gtagaccggt tctttaaaac tttaagagcc
901 gaacaagcta cacaagaggt aaaaaattgg atgacagaca ccttgttggt tcaaaatgcg
961 aacccagatt gtaagaacat tttaagagca ttaggaccag gggtttcagt agaagagatg
1021 atgacagcat ttcagggagt gggagggcct cgccccaaag ccagagtgtt ggttgaggca
1081 atgagtcaag caaacagcag cataatgatg cagagaggta attttaaagg ttttaaaaga
1141 actattaaat gtttcaggtg tggcaaggaa gggcactttt ccagaaattg cagggcccct
1201 aggaaaaagg gctgttggaa gtgtggaaag gaaggacacc aaatgaaagt ttgtattgcg
1261 tggcagggta atcttttagg gaaaatttgg ccttccctca aggggaggcc aggaaatttt
1321 gtccagatca gaccagagcc tacagcccca ccagcagaga gcttcaggtt cgaggagaca
1381 accccctctc agaagcacga ccccttcgac gggaaaccct tatcttccct caaatcactc
1441 tttgacaacg accccttgtc tcaa
//
last modified: Tue May 31 10:56 2022