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TreeRate

Purpose: To find a root of a phylogenetic tree and estimate the evolutionary rate(s), by either outgrouping, or single or multiple time point optimization.

How to use: Paste or upload a tree file in standard Newick format and choose a rooting method. To calculate the evolutionary rate, time point data must also be provided. For details, see TreeRate Explanation.

Input
Paste your Newick tree
[Sample Input]
Or upload Newick tree file
Rooting method
By outgroup Branch length
By single time point Generalized midpoint optimization 
Simple midpoint
By multiple time points Minimum sum of variance optimization


References

Please reference these articles when using TreeRate:

last modified: Thu Mar 7 11:53 2013


Questions or comments? Contact us at seq-info@lanl.gov.

 
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