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TreeRate

Purpose: To find a root of a phylogenetic tree and estimate the evolutionary rate(s), by either outgrouping, or single or multiple time point optimization.

How to use: Paste or upload a tree file in standard Newick format and choose a rooting method. To calculate the evolutionary rate, time point data must also be provided. For details, see TreeRate Explanation.

Input
Paste your Newick tree
[Sample Input]
Or upload Newick tree file
Rooting method
By outgroup Branch length
By single time point Generalized midpoint optimization 
Simple midpoint
By multiple time points Minimum sum of variance optimization
E-mail Always email results in time point optimization


References

Please reference these articles when using TreeRate:

last modified: Thu May 15 08:42 2014


Questions or comments? Contact us at seq-info@lanl.gov.

 
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