SUDI Example Outfile
Below is an example of a Phylip outfile. All unknown
sequences need to be labeled U_seqID, where seqID represents
the sequence name. The outfile must be labeled as "OUTFILE"!
The basenode for this examples is node 20.
22 Populations
Neighbor-Joining/UPGMA method version 3.55c
Neighbor-joining method
Negative branch lengths allowed
+U_4057
+-12
! ! +U_78
! +-11
! ! +U_P1795
+-15 +-10
! ! +U_P2911
! !
! ! +-A_KE.Q231
! ! +-13
+-16 +-14 +--A_SE.UGSE
! ! !
! ! +-A_UG.U455
! !
! ! +F1_DJ.DJ2
! ! +--5
+-17 +--6 +F1_DJ.DJ2
! ! !
! ! +F2_NG.IBN
! !
! ! +-G_BE.DRCB
! ! +--8
! ! ! ! +-G_NG.92NG
! +--9 +--7
+-19 ! +-G_SE.SE61
! ! !
! ! +-G_FI.HH87
! !
! ! +B_AU.MBC9
! ! +--1
! ! +--2 +B_CN.RL42
! ! ! !
! +-18 +-B_DE.HAN2
! !
! +---K_ZR.EQTB
!
! +-C_BR.92BR
! +--3
-20--4 +-C_ET.ETH2
! !
! +C_BW.96BW
!
+-------------------OUTGROUP
remember: (although rooted by outgroup) this is an unrooted tree!
Between And Length
------- --- ------
20 19 0.00371
19 17 0.00461
17 16 0.01282
16 15 0.00119
15 12 0.02192
12 U_4057 0.02254
12 11 0.00028
11 U_78 0.02137
11 10 0.00203
10 U_P1795 0.02057
10 U_P2911 0.02033
15 14 0.01099
14 13 0.00293
13 A_KE.Q231 0.03176
13 A_SE.UGSE 0.03884
14 A_UG.U455 0.03692
16 6 0.02355
6 5 0.00858
5 I_DJ.DJ2 0.01597
5 I_DJ.DJ2 0.00963
6 I_NG.IBN 0.01732
17 9 0.02420
9 8 0.00187
8 G_BE.DRCB 0.03366
8 7 0.00084
7 G_NG.92NG 0.02974
7 G_SE.SE61 0.02886
9 G_FI.HH87 0.02993
19 18 0.00423
18 2 0.03291
2 1 0.00282
1 B_AU.MBC9 0.01690
1 B_CN.RL42 0.02260
2 B_DE.HAN2 0.02098
18 K_ZR.EQTB 0.06284
20 4 0.02720
4 3 0.00299
3 C_BR.92BR 0.03458
3 C_ET.ETH2 0.03492
4 C_BW.96BW 0.02911
20 OUTGROUP 0.33142
last modified: Wed Aug 8 16:35 2007