Protein Feature Accent

This is a beta version!
Some capabilities are not fully implemented, and there may be bugs or other problems. Please use with care and a sense of humor.

Purpose   The Protein Feature Accent tool is a quick way to map protein sequence features (for example a short functional domain or an epitope) from a sequence directly on to an interactive graphic of the 3-D structure of the protein. Only selected HIV Env structures are available now; more proteins and structures are coming soon.

New features

• Predicted N-linked glycosylation site highlighting
• User-supplied alignment entropy color scheme
• PDB file upload option

We are in the process of adding additional features to the tool.

Select a structure:	1G9M: HXBC2 gp120 1RZK: YU2 gp120 2B4C: JRFL gp120 2BF1: MAC32H gp120 2NY7: HXBC2 gp120
or upload a PDB file:
You may provide an amino acid sequence alignment (or a single raw sequence) below:
Paste your sequence(s) here [Sample Input]
or upload a sequence file:

References:

• Jmol website

Contributers:

• Bette Korber - concept, vision, and leadership (at lanl.gov, email address 'btk')
• S. 'Gnana' Gnanakaran - concept, structures information (at lanl.gov, email address 'gnana')
• Jim Thurmond - programming and design (at lanl.gov, email address 'thurmond')

Tool Development Sponsored By: