This is a beta version!
Some capabilities are not fully implemented, and there may be bugs or other problems.
Please use with care and a sense of humor.
Purpose: The Protein Feature Accent tool is a quick way to map protein sequence features (for example a short functional domain or an epitope) from a sequence directly on to an interactive graphic of the corresponding 3-D structure of the protein.
How to use:
The tool needs only to be directed to use a particular protein structure
file in PDB format.
Uploading a sequence is not required; the sequence associated with the
chosen structure will always be displayed.
Any sequences you do provide will be analyzed
(for entropy, etc.),
aligned with the structure sequence, and displayed.
Selected HIV Env structures are provided in a menu below.
More proteins and structures will soon be made available this way as well.
If you prefer, you may upload a PDB file for a structure you wish to use
instead of those available here.
New features:
References:
Contributors:
Tool Development Sponsored In Part By: