HIV Databases HIV Databases home HIV Databases home
HIV sequence database



Protein Feature Accent

Purpose:   To view 3D structures of HIV proteins and to map a desired sequence (e.g., short functional domain or epitope) directly onto the interactive graphic.

How to use:   Click on one of the structures listed, or upload a structure file in PDB format. Uploading a sequence is not required. Any sequences you do provide will be analyzed for entropy and glycosylation, aligned with the structure sequence, and displayed. For details, see Protein Feature Accent Explanation. This tool requires that Java be installed on your computer.

Click here for a list of all the HIV structures available.

This is a beta version!
Some capabilities are not fully implemented, and there may be bugs or other problems. Please use with care and a sense of humor.

Select a protein structure:
[switch to full structure list]

HIV  SIV 
OR
upload a PDB file:
You may provide an amino acid sequence alignment (or a single unaligned sequence) below:
Paste your sequence(s) here
[Sample Input]
or upload a sequence file:

References:

Contributors:

Tool Development Sponsored In Part By:

Comprehensive Antibody-Vaccine Immune Monitoring Consortium
last modified: Thu Sep 1 11:39 2011


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Los Alamos National Security, LLC, for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2012 LANS LLC All rights reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health