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Primer Aligner

This page is no longer maintained. You will be redirected to the QuickAlign tool page.

Purpose: PrimAlign will generate an alignment of your nucleotide sequence against our curated sequence alignment.

Details: This tool can be used to align primers, functional domains, or any nucleotide sequence of interest. To perform such an analysis using protein sequences, see Epilign.

Input should consist of a single nucleotide sequence. The output you receive will include a map of the reference genome with your sequence plotted, a summary of the changes in your sequence relative to each of the alignment sequences, a display of the alignment of your sequence, and an option to download the alignment.

Input
Paste your input here
or upload your file

Options

Do wide output? yes no

last modified: Wed Jul 23 11:44 2008


Questions or comments? Contact us at seq-info@lanl.gov.

 
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