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Primer Aligner

This page is no longer maintained. You will be redirected to the QuickAlign tool page.

Purpose: PrimAlign will generate an alignment of your nucleotide sequence against our curated sequence alignment.

Details: This tool can be used to align primers, functional domains, or any nucleotide sequence of interest. To perform such an analysis using protein sequences, see Epilign.

Input should consist of a single nucleotide sequence. The output you receive will include a map of the reference genome with your sequence plotted, a summary of the changes in your sequence relative to each of the alignment sequences, a display of the alignment of your sequence, and an option to download the alignment.

Input
Paste your input here
[Sample Input]
or upload your file

Options

Do wide output? yes no

last modified: Wed Jul 23 11:44 2008


Questions or comments? Contact us at seq-info@lanl.gov.

 
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