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HIV sequence database



Show model parameters

Click on a model name to show which parameters it uses

JC: Jukes-Cantor
JC+: Jukes-Cantor plus Gamma
F81: Felsenstein 1981
F81+: Felsenstein 1981 plus Gamma
K80: Kimura 2-parameter
K80+: Kimura 2-parameter plus Gamma
HKY: Hasegawa-Kishino-Yano
HKY+: Hasegawa-Kishino-Yano plus Gamma
TrNEF: Equal-frequency Tamura-Nei
TrNEF+: Equal-frequency Tamura-Nei plus Gamma
TrN: Tamura-Nei
TrN+: Tamura-Nei plus Gamma
K81: Kimura 3-parameter
K81+: Kimura 3-parameter plus Gamma
K81uf: Unequal-frequency Kimura 3-parameter
K81uf+: Unequal-frequency Kimura 3-parameter plus Gamma
TIMef: Equal-frequency Transition Model
TIMef+: Equal-frequency Transition Model plus Gamma
TIM: Transition Model
TIM+: Transition Model plus Gamma
TVMef: Equal-frequency Transversion Model
TVMef+: Equal-frequency Transversion Model plus Gamma
TVM: Transversion Model
TVM+: Transversion Model plus Gamma
SYM: Symmetrical Model
SYM+: Symmetrical Model plus Gamma
GTR: General Time Reversible
GTR+: General Time Reversible plus Gamma

last modified: Tue Jul 22 11:50 2008


Questions or comments? Contact us at seq-info@lanl.gov.

 
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