HIV Databases HIV Databases home HIV Databases home
HIV sequence database



PeptGen Peptide Generator

Purpose: To generate sets of overlapping peptides that can be used for peptide design and epitope mapping.

How to use: Paste or upload amino acid sequence(s) in any valid sequence format. Change the default values for the other parameters as needed. You may want to use an HIV consensus sequence as input. For additional details, see PeptGen Explanation.

Input
Paste your input here
or upload your file
If you are submitting an alignment check this box

Options
Make peptides of length C-terminal forbidden amino acids *
Overlap peptides by N-terminal forbidden amino acids *
Shorten by Apply proline rule * Yes No
Lengthen by Calculate hydropathy * Yes No
    Color amino acids Yes No
* For the first sequence only in alignment input

Output
Output style Stairstepping aligned
Simple
Simple style classic new
Duplicate peptides * flag remove
Gaps remove save
* Duplicity within a peptide block
last modified: Thu Dec 11 11:23 2014


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Los Alamos National Security, LLC, for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2012 LANS LLC All rights reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health