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HIV sequence database



Hypermut Original: data sheet

Complete View

The input file has 23 sequences
Sequence Length: 645
Compared to 313-9-1-1.FORM2-2, 264 As, 126 Gs, 92 Cs, 163 Ts

  --------------------------------------------------

                                                                        Dinuc Context:
                                                                      _________________
Sequences_names         Ratio       #diffs   perc_Gs   #A->G  #G->A   GG   GA   GC   GT    OBSERVED CHANGES

 313-9-2-1.FORM1-14     0/0           1       0.00       0      0      0    0    0    0    TC
 313-9-2-31             0/0           2       0.00       0      0      0    0    0    0    TC  AT
 313-9-2-34A            3/3           32      2.38       3      3      1    2    0    0    TC  AG  TA  GA  CT  CA  GA  AT  CT  AG  A-  T-  A-  G-  T-  A-  C-  T-  T-  G-  G-  A-  A-  T-  G-  T-  T-  A-  TG  AG  GA  TC
 313-9-3-10             5/2           33      3.97       2      5      2    3    0    0    GA  TA  GA  CT  CA  GA  AT  CT  AG  A-  T-  A-  G-  T-  A-  C-  T-  T-  G-  G-  A-  A-  T-  G-  T-  T-  A-  TG  AG  TG  GA  GA  TC
 313-9-3-12.FORM1-9     0/0           1       0.00       0      0      0    0    0    0    TC
 313-9-3-13             27/0          28      21.43      0      27     21   5    0    1    GA  TC  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA
 313-9-3-18             1/0           2       0.79       0      1      1    0    0    0    TC  GA
 313-9-3-22             1/0           2       0.79       0      1      0    1    0    0    TC  GA
 313-9-3-24             0/0           3       0.00       0      0      0    0    0    0    TC  AC  AT
 313-9-3-27             1/0           2       0.79       0      1      0    1    0    0    TC  GA
 313-9-3-4              1/0           2       0.79       0      1      0    0    1    0    TC  GA
 313-9-3-5              17/0          18      13.49      0      17     16   0    0    1    TC  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA
 313-9-4-5              58/0          59      46.03      0      58     17   40   1    0    GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  TC  GA
 313-9-4-13             1/0           2       0.79       0      1      0    1    0    0    TC  GA
 313-9-4-18             0/0           2       0.00       0      0      0    0    0    0    TC  AT
 313-9-4-14             29/0          30      23.02      0      29     20   9    0    0    GA  GA  TC  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA
 313-9-4-20             0/0           2       0.00       0      0      0    0    0    0    TC  AC
 313-9-4-24             22/0          23      17.46      0      22     21   1    0    0    GA  TC  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA
 313-9-4-25.FORM1-11    0/0           1       0.00       0      0      0    0    0    0    TC
 313-9-4-2              0/0           3       0.00       0      0      0    0    0    0    TC  CT  CA
 313-9-4-7              25/0          26      19.84      0      25     16   8    0    1    TC  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA  GA
 313-9-4-51.FORM2-2     0/0           0       0.00       0      0      0    0    0    0

  -------------------------------------------------

Subregion View

The input file has 23 sequences
Selected Region from 1 to 645
Compared to 313-9-1-1.FORM2-2, 264 As, 126 Gs, 91 Cs, 163 Ts

  --------------------------------------------------

                                                                 Dinuc Context:
                                                                _________________
Sequences_names       Ratio   #diffs   perc_Gs   #A->G  #G->A   GG   GA   GC   GT   OBSERVED CHANGES

 313-9-2-1.FORM1-14  0/0        1       0.00      0       0      0    0    0    0   TC
 313-9-2-31          0/0        2       0.00      0       0      0    0    0    0   TC AT
 313-9-2-34A         3/3        32      2.38      3       3      1    2    0    0   TC AG TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG GA TC
 313-9-3-10          5/2        33      3.97      2       5      2    3    0    0   GA TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG TG GA GA TC
 313-9-3-12.FORM1-9  0/0        1       0.00      0       0      0    0    0    0   TC
 313-9-3-13          27/0       28      21.43     0       27     21   5    0    1   GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
 313-9-3-18          1/0        2       0.79      0       1      1    0    0    0   TC GA
 313-9-3-22          1/0        2       0.79      0       1      0    1    0    0   TC GA
 313-9-3-24          0/0        3       0.00      0       0      0    0    0    0   TC AC AT
 313-9-3-27          1/0        2       0.79      0       1      0    1    0    0   TC GA
 313-9-3-4           1/0        2       0.79      0       1      0    0    1    0   TC GA
 313-9-3-5           17/0       18      13.49     0       17     16   0    0    1   TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
 313-9-4-5           58/0       59      46.03     0       58     17   40   1    0   GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TC GA
 313-9-4-13          1/0        2       0.79      0       1      0    1    0    0   TC GA
 313-9-4-18          0/0        2       0.00      0       0      0    0    0    0   TC AT
 313-9-4-14          29/0       30      23.02     0       29     20   9    0    0   GA GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
 313-9-4-20          0/0        2       0.00      0       0      0    0    0    0   TC AC
 313-9-4-24          22/0       23      17.46     0       22     21   1    0    0   GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
 313-9-4-25.FORM1-11 0/0        1       0.00      0       0      0    0    0    0   TC
 313-9-4-2           0/0        3       0.00      0       0      0    0    0    0   TC CT CA
 313-9-4-7           25/0       26      19.84     0       25     16   8    0    1   TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
 313-9-4-51.FORM2-2  0/0        0       0.00      0       0      0    0    0    0

last modified: Wed Aug 8 16:49 2007


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