HIV sequence database
Hypermut Original: data sheet
Complete View
The input file has 23 sequences
Sequence Length: 645
Compared to 313-9-1-1.FORM2-2, 264 As, 126 Gs, 92 Cs, 163 Ts
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Dinuc Context:
_________________
Sequences_names Ratio #diffs perc_Gs #A->G #G->A GG GA GC GT OBSERVED CHANGES
313-9-2-1.FORM1-14 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-2-31 0/0 2 0.00 0 0 0 0 0 0 TC AT
313-9-2-34A 3/3 32 2.38 3 3 1 2 0 0 TC AG TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG GA TC
313-9-3-10 5/2 33 3.97 2 5 2 3 0 0 GA TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG TG GA GA TC
313-9-3-12.FORM1-9 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-3-13 27/0 28 21.43 0 27 21 5 0 1 GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-3-18 1/0 2 0.79 0 1 1 0 0 0 TC GA
313-9-3-22 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-3-24 0/0 3 0.00 0 0 0 0 0 0 TC AC AT
313-9-3-27 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-3-4 1/0 2 0.79 0 1 0 0 1 0 TC GA
313-9-3-5 17/0 18 13.49 0 17 16 0 0 1 TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-5 58/0 59 46.03 0 58 17 40 1 0 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TC GA
313-9-4-13 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-4-18 0/0 2 0.00 0 0 0 0 0 0 TC AT
313-9-4-14 29/0 30 23.02 0 29 20 9 0 0 GA GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-20 0/0 2 0.00 0 0 0 0 0 0 TC AC
313-9-4-24 22/0 23 17.46 0 22 21 1 0 0 GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-25.FORM1-11 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-4-2 0/0 3 0.00 0 0 0 0 0 0 TC CT CA
313-9-4-7 25/0 26 19.84 0 25 16 8 0 1 TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-51.FORM2-2 0/0 0 0.00 0 0 0 0 0 0
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Subregion View
The input file has 23 sequences
Selected Region from 1 to 645
Compared to 313-9-1-1.FORM2-2, 264 As, 126 Gs, 91 Cs, 163 Ts
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Dinuc Context:
_________________
Sequences_names Ratio #diffs perc_Gs #A->G #G->A GG GA GC GT OBSERVED CHANGES
313-9-2-1.FORM1-14 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-2-31 0/0 2 0.00 0 0 0 0 0 0 TC AT
313-9-2-34A 3/3 32 2.38 3 3 1 2 0 0 TC AG TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG GA TC
313-9-3-10 5/2 33 3.97 2 5 2 3 0 0 GA TA GA CT CA GA AT CT AG A- T- A- G- T- A- C- T- T- G- G- A- A- T- G- T- T- A- TG AG TG GA GA TC
313-9-3-12.FORM1-9 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-3-13 27/0 28 21.43 0 27 21 5 0 1 GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-3-18 1/0 2 0.79 0 1 1 0 0 0 TC GA
313-9-3-22 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-3-24 0/0 3 0.00 0 0 0 0 0 0 TC AC AT
313-9-3-27 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-3-4 1/0 2 0.79 0 1 0 0 1 0 TC GA
313-9-3-5 17/0 18 13.49 0 17 16 0 0 1 TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-5 58/0 59 46.03 0 58 17 40 1 0 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA TC GA
313-9-4-13 1/0 2 0.79 0 1 0 1 0 0 TC GA
313-9-4-18 0/0 2 0.00 0 0 0 0 0 0 TC AT
313-9-4-14 29/0 30 23.02 0 29 20 9 0 0 GA GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-20 0/0 2 0.00 0 0 0 0 0 0 TC AC
313-9-4-24 22/0 23 17.46 0 22 21 1 0 0 GA TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-25.FORM1-11 0/0 1 0.00 0 0 0 0 0 0 TC
313-9-4-2 0/0 3 0.00 0 0 0 0 0 0 TC CT CA
313-9-4-7 25/0 26 19.84 0 25 16 8 0 1 TC GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
313-9-4-51.FORM2-2 0/0 0 0.00 0 0 0 0 0 0
last modified: Wed Aug 8 16:49 2007
