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NOTE: This program is no longer maintained, and technical support is not available.

Protein Structure

Purpose: This page provides a visualization tool to interpret protein sequence alignment. It gives a color display of chemical properties, specifically the hydrophobicity or classification of amino acids.

Details:

Input
Enter a title (optional)
Paste sequence alignment in FASTA format
Or upload a file in FASTA format
Choose output Display hydrophobic properties---Rose scale
Display hydrophobic properties---Kyte and Doolittle scale
Display hydrophobic properties---Wolfenden scale
Display hydrophobic properties---Janin scale
Display chemical classifications of amino acid side chains

last modified: Thu Apr 29 09:52 2010


Questions or comments? Contact us at seq-info@lanl.gov.

 
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