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Chemical Classification Example


Navy The positively charged group [K,R,H]
Blue The amidic (amide-containing) group [Q,N]
Aqua The aliphatic group [A,G,L,I,P,V]
Green The aromatic group [F,W,Y]
Orange The sulphur containing group [C,M]
purple The hydroxylic group [S,T]
Red The negatively charged group [D,E]
Conserved positions *; Conserved positions in the same group#; Variable positions ?.

0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * * * * * * * * * * * * # * # * ? * * ? ? ? ? ? ? * ? * * ? Q D L P G N D N S T A T L C L G H H A V P N G T L V K T I T 30 11HGF - - - - - - - - - - - - I C I G Y H A N N S T E Q V D T I M 18 TARGET

30 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 # ? # # ? * * ? * ? # # # ? ? # ? ? * * # * ? * * # ? # # * D D Q I E V T N A T E L V Q S S S T G K I C N - N P H R I L 59 11HGF E K N V T V T H A Q D I L E R T H N G K L C D L N G V K P L 48 TARGET

60 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 ? # ? * * # # # ? ? * * * ? * ? * * ? * ? * * ? ? * ? ? ? * D G I D C T L I D A L L G D P H C D V F Q N - E T W D L F V 88 11HGF I L R D C S V A G W L L G N P M C D E F I N V P E W S Y I V 78 TARGET

90 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * # ? ? # ? ? ? * * * * ? ? ? ? * * ? ? * # ? * # ? ? ? ? ? E R S K A F S N - C Y P Y D V P D Y A S L R S L V A S S G T 117 11HGF E K A S P A N D L C Y P G N F N D Y E E L K H L L S R I N H 108 TARGET

120 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 ? * ? * * * ? ? ? ? # * # ? ? ? ? ? ? * * * ? * * ? ? # # ? L E F I - - T E G F T W T G V T Q N G G - S N A C K R G P G 144 11HGF F E K I Q I I P K S S W S N H D A S S G V S S A C P Y L G R 138 TARGET

150 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * ? * * ? ? # ? * * ? * ? ? * ? * * ? # ? ? # ? ? * ? ? # ? S G F F S R L N W L T K S G S T Y P V L N V T M P N N D N F 174 11HGF S S F F R N V V W L I K K N S A Y P T I K R S Y N N T N Q E 168 TARGET

180 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * ? * ? # * * * * * * ? ? ? ? * * * ? * * ? # # # ? ? # # * D K L Y I W G I H H P S T N Q E Q T S L Y V Q A S G R V T V 204 11HGF D L L V L W G I H H P N D A A E Q T K L Y Q N P T T Y I S V 198 TARGET

210 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 ? * ? ? ? # * ? # # * ? * # # * * ? * ? * ? * ? * ? ? ? # * S T R R S Q Q T I I P N I G S R P W V R G L S S R I S I Y W 234 11HGF G T S T L N Q R L V P E I A T R P K V N G Q S G R M E F F W 228 TARGET

240 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * * # * * ? * # # ? ? ? * * * * ? * * * ? ? ? # * ? * # ? * T I V K P G D V L V I N S N G N L I A P R G Y F K M - R T G 263 11HGF T I L K P N D A I N F E S N G N F I A P E Y A Y K I V K K G 258 TARGET

270 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 ? * # * * # * # # ? ? ? ? * ? # ? * ? * * ? * ? * ? ? ? ? * K S S I M R S D A P I D T C I S E C I T P N G S I P N D K P 293 11HGF D S T I M K S E L E Y G N C N T K C Q T P M G A I N S S M P 288 TARGET

300 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 * ? * # ? ? # * ? * ? * * * * * * ? * ? * ? * * * * ? * * ? F Q N V N K I T Y G A C P K Y V K Q N T L K L A T G M R N V 323 11HGF F H N I H P L T I G E C P K Y V K S N R L V L A T G L R N T 318 TARGET

330 1 2 3 4 5 6 7 8 9 0 1 * ? # ? ? * * * * * * P E K Q T - - - - - - 328 11HGF P Q R E R R R K K R G 329 TARGET

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last modified: Wed Aug 8 17:06 2007


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