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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for

How to Cite this Database

Editorial Board


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Archived News News

HIV Molecular Immunology 2015
HIV Molecular Immunology 2015 is now available online. The PDF version is hypertext enabled and features clickable table-of-contents, indexes, references and links to external web sites. 06 April 2016

Annotate Tree
We now provide two tools to make color-enhanced phylogenetic trees. Our new tool, Annotate Tree, generates tree figures with branch weights and colors based on mappings of numerical values to taxa. These values can be any set of discrete or continuous numerical values, so that, for instance, virulence can be visualized relative to phylogeny. We also have the tool Rainbow Tree, which produces a tree with colored branches based on discrete groupings of taxa defined by the taxon name. 05 April 2016

last modified: Tue Mar 15 10:55 2016

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