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HIV sequence database



HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function

Alignments

HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments

Information

HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for www.hiv.lanl.gov

How to Cite this Database

Editorial Board

 

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Archived News News


Improvements to Pixel
The Pixel tool provides quality control for alignments by producing a graphic image with colored pixels corresponding to nucleotide or amino acid residues. A new Advanced version of the tool provides new color schemes and allows users more control over the appearance of the image. 07 July 2016

Improvements to Highlighter
The Highlighter tool provides a graphical view of sequence matches, mismatches, transitions, transversions, silent, and non-silent mutations in protein or nucleotide alignments. The major new feature is the highlighting of glycosylation motifs in amino acid alignments. Minor improvements include the ability to change the width of the tic marks, revised logic for transition/transversion highlighting, and new options for matches highlighting. 06 July 2016


last modified: Tue Mar 15 10:55 2016


Questions or comments? Contact us at seq-info@lanl.gov.

 
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