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HIV sequence database



HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Tools for working with sequences lists all our online tools, organized by function

Alignments

HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments

Information

HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for www.hiv.lanl.gov

How to Cite this Database

Editorial Board


Archived News News


AnalyzeAlign
A new tool, AnalyzeAlign, is available. Input any alignment and the tool will show weblogos, calculate frequency by position, and find variants. The user may analyze the alignment as a whole, or specify subgroupings for analysis. Many options are provided to customize the weblogo image. 23 March 2015

CATNAP: Custom Input
The original CATNAP tool can compile, analyze and tally neutralizing antibody panels from a database of publicly available HIV neutralization data. A new version, CATNAP: Custom Input, is now available. This version allows users to input their own neutralization panel data and perform the same analyses. HIV Env sequences are available as a premade alignment, or can be provided by the user. 12 March 2015

HIV Molecular Immunology 2014
HIV Molecular Immunology 2014 is now available online. The PDF version is hypertext enabled and features clickable table-of-contents, indexes, references and links to external web sites. 04 February 2015

2014 HIV Sequence Compendium
2014 was the last year that we printed and shipped the HIV Sequence Compendium. Printed copies of the 2014 compendium are still available on request. 21 January 2015


last modified: Thu Oct 23 11:27 2014


Questions or comments? Contact us at seq-info@lanl.gov.

 
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