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HIV sequence database

HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function


HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments


HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for

How to Cite this Database

Editorial Board

Archived News News

Updates for Protein Feature Accent
The Protein Feature Accent tool can be used to view and manipulate 3D structures of HIV/SIV proteins. Our newly-updated version of the tool no longer requires your browser to have Java installed. It has several new options, including a button to view the whole trimer of the HIV-1 Env SOSIP structure. 10 November 2015

HIV Sequence Compendium 2015
HIV Sequence Compendium 2015 is now available online. The 2015 Compendium is only available online in PDF format. 2014 was the last year that we printed and shipped the HIV Sequence Compendium; printed copies of last year's compendium are still available on request. 06 October 2015

last modified: Mon Aug 24 13:46 2015

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