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HIV Sequence Database



HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome

Tools for working with sequences lists all our online tools, organized by function

Alignments

HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments

Information

HIV Sequence Compendium our annual publication

Tutorials and other information unpublished web-based content

About this website

FAQ general information about this website

How to Cite this Database

Editorial Board


Archived News News


Conference on Retroviruses and Opportunistic Infections (CROI) 2024
LANL HIV Database staff will be attending the Conference on Retroviruses and Opportunistic Infections (CROI). Please find our group members or contact us (immuno@lanl.gov or seq-info@lanl.gov) if you would like to meet with us. We would be happy to demonstrate how to use our HIV Databases, hear your suggestions, or discuss potential collaborations. 23 February 2024

New tool: CAByN
CAByN (Choose Antibodies by Neutralization) is a new tool allowing users to search for antibodies with specific neutralization properties (e.g. neutralization breadth, neutralization activity against certain HIV-1 viral subtypes). 08 February 2024

Nextstrain phylogenies and alignments
Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data by providing curated public data with analytic and visualization tools. The LANL HIV Database team contributes to this project with phylogenetic trees, which can be viewed with a suite of interactive options. For details, please view HIV datasets at Nextstrain; you can download the associated HIV alignments from our website. 07 February 2024

HIV Molecular Immunology 2023
HIV Molecular Immunology 2023 is now available online. The PDF version is hypertext enabled and features clickable table-of-contents, indexes, references and links to external web sites. 19 January 2024


last modified: Mon Mar 20 14:43 2023


Questions or comments? Contact us at seq-info@lanl.gov.

 
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