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HIV sequence database



HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Tools for working with sequences lists all our online tools, organized by function

Alignments

HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments

Information

HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for www.hiv.lanl.gov

How to Cite this Database

Editorial Board


Archived News News


New QuickAlign Options
QuickAlign will align epitopes, functional domains, primers, binding sites, or any region of interest, to the HIV Sequence Database pre-built genome or protein alignments, or to your own alignment. Conventional QuickAlign works as it did previously. Input a sequence, and see that sequence aligned to any alignment. If several sequences are submitted together, each has its own results. The new Discontinuous QuickAlign accepts coordinate positions as input, and concatenates multiple inputs into a single spliced alignment. New options for both versions allow you to highlight potential N-linked glycosylation sites and control the appearance of the sequence logos included in the summarized results. 17 September 2014

Recombinant HIV-1 Drawing Tool
The Recombinant HIV-1 Drawing Tool has a new feature that allows users to select custom colors. This tool makes a color-coded figure to depict the subtype breakpoints for any HIV-1 recombinant or CRF. 26 August 2014

Sequence Compendium Subscriptions
The 2014 HIV Sequence Compendium will be printed and shipped soon. This year is probably the last time the compendium will be printed and mailed. If you need to subscribe, unsubscribe, or change your mailing address, please visit our Subscription page. 25 August 2014


last modified: Tue Jan 26 10:10 2010


Questions or comments? Contact us at seq-info@lanl.gov.

 
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