Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees
Geography Search Interface retrieves HIV sequences based on geographical distribution
Genome Browser uses jBrowse to display diverse data about the HIV-1 genome and proteome
Tools for working with sequences lists all our online tools, organized by function
HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments
HIV Sequence Compendium our annual publication
Tutorials and other information unpublished web-based content
FAQ general information about this website
Conference on Retroviruses and Opportunistic Infections (CROI) 2024
LANL HIV Database staff will be attending the Conference on Retroviruses and Opportunistic Infections (CROI). Please find our group members or contact us (immuno@lanl.gov or seq-info@lanl.gov) if you would like to meet with us. We would be happy to demonstrate how to use our HIV Databases, hear your suggestions, or discuss potential collaborations.
23 February 2024
New tool: CAByN
CAByN (Choose Antibodies by Neutralization) is a new tool allowing users to search for antibodies with specific neutralization properties (e.g. neutralization breadth, neutralization activity against certain HIV-1 viral subtypes).
08 February 2024
Nextstrain phylogenies and alignments
Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data by providing curated public data with analytic and visualization tools. The LANL HIV Database team contributes to this project with phylogenetic trees, which can be viewed with a suite of interactive options. For details, please view HIV datasets at Nextstrain; you can download the associated HIV alignments from our website.
07 February 2024
HIV Molecular Immunology 2023
HIV Molecular Immunology 2023 is now
available online. The PDF version is hypertext enabled and features
clickable table-of-contents, indexes, references and links to external
web sites.
19 January 2024