HIV Databases HIV Databases home HIV Databases home
HIV sequence database



HIV Sequence Database

Programs and Tools

Search Interface retrieves HIV and SIV sequences, which can then be aligned and used to build trees

Geography Search Interface retrieves HIV sequences based on geographical distribution

Tools for working with sequences lists all our online tools, organized by function

Alignments

HIV Premade Alignments includes Consensus and Ancestral Sequences, Subtype Reference Alignments, and Complete Alignments

Information

HIV Sequence Compendium print or order our annual publication

Tutorials and other information unpublished web-based content

Links to other HIV/AIDS tools and information

About this website

FAQ general information about this website

Site Statistics usage information for www.hiv.lanl.gov

How to Cite this Database

Editorial Board


Archived News News


Ebola HFV Database updated
Ebola research capabilities have been enhanced at the LANL HFV (Hemorrhagic Fever Viruses) database. Tools with new capabilities for Ebola include curated Sequence Alignments, QuickAlign, and Geography Search. More resources will be added in the next few weeks. 25 November 2014

New QuickAlign Options
QuickAlign will align epitopes, functional domains, primers, binding sites, or any region of interest, to the HIV Sequence Database pre-built genome or protein alignments, or to your own alignment. Conventional QuickAlign works as it did previously. Input a sequence, and see that sequence aligned to any alignment. If several sequences are submitted together, each has its own results. The new Discontinuous QuickAlign accepts coordinate positions as input, and concatenates multiple inputs into a single spliced alignment. New options for both versions allow you to highlight potential N-linked glycosylation sites and control the appearance of the sequence logos included in the summarized results. 17 September 2014


last modified: Thu Oct 23 11:27 2014


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Los Alamos National Security, LLC, for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2012 LANS LLC All rights reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health