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Citations for Review Articles

This page lists bibliographic citation information for review articles from both:
     HIV Sequence Compendium (in red)
     HIV Molecular Immunology Compendium (in green)

Link to: Review articles

 

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

 

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Abecasis A, Vandamme A, Lemey P (2007). Sequence Alignment in HIV Computational Analysis pp. 2-16 in HIV Sequence Compendium 2006/2007. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 07-4826

Allen TM and Watkins DI (1998). SIV and SHIV CTL Epitopes Identified in Macaques. pp. IV-8-13 in HIV Molecular Immunology Database 1998. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Allen TM and Watkins DI (1999). SIV and SHIV CTL Epitopes Identified in Macaques. pp. IV-45-54 in HIV Molecular Immunology Database 1999. Edited by: Korber TM, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Altman JD and Safrit JT (1998). MHC Tetramer Analyses of CD8+ T Cell Responses to HIV and SIV. pp. IV-36-45 in HIV Molecular Immunology Database 1998. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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Beer BE, Bailes E, Sharp PM, Hirsch VM (1999). Diversity and Evolution of Primate Lentiviruses. pp. 460-474 in Human Retroviruses and AIDS 1999. Edited by: Kuiken CL, Foley B, Hahn B, Korber B, McCutchan F, Marx PA, Mellors JW, Mullins JI, Sodroski J, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brander C and Goulder PJR (1999). Recent Advances in HIV-1 CTL Epitope Characterization. pp. IV-1-17 in HIV Molecular Immunology Database 1999. Edited by: Korber TM, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brander C and Goulder PJR (2000).The Evolving Field of HIV CTL Epitope Mapping: New Approaches to the Identification of Novel Epitopes.pp. I-1-19 in HIV Molecular Immunology 2000. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 01-2530.

Brander C and Goulder PJR (2001). The Identification of Optimal HIV-Derived CTL Epitopes in Diverse Populations Using HIV Clade-Specific Consensus,pp. I-1-20 in HIV Molecular Immunology 2001. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Brander C and Walker BD (1995).The HLA-class I Restricted CTL Response in HIV-1 Infection: Identification of Optimal Epitopes. pp. IV-1-9 in HIV Molecular Immunology Database 1995. Edited by: Korber B, Brander C, Walker BD, Koup R, Moore JP, Haynes BF, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brander C and Walker BD (1996).The HLA-class I Restricted CTL Response in HIV-1 Infection: Systematic Identification of Optimal Epitopes. pp. IV-50-60 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brander C and Walker BD (1997).Systematic Identification of Optimal HIV-1 CTL Epitopes. pp. IV-1-11 in HIV Molecular Immunology Database 1997. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brander C and Walker BD (1998).Systematic Identification of Optimal HIV-1 CTL Epitopes. pp. IV-14-26 in HIV Molecular Immunology Database 1998. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Broder CC and Jones-Trower A. Coreceptor Use by Primate Lentiviruses (1999). pp. 517-541 in Human Retroviruses and AIDS 1999. Edited by: Kuiken CL, Foley B, Hahn B, Korber B, McCutchan F, Marx PA, Mellors JW, Mullins JI, Sodroski J, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Brumme, ZL, Poon, AFY, Carlson, JM, Walker, BD (2010). Identifying HLA-Associated Polymorphisms in HIV-1. pp. 3-8 in HIV Molecular Immunology 2010. Yusim, K, Korber B, Brander, C, Barouch, D, de Boer, R, Haynes, BF, Koup, R, Moore, JP, Walker, BD, Watkins, DI, Eds. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 11-11696.

 

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Calef C, Kuiken C, Szinger J, Gaschen B, Abfalterer W, Zhang M, Tao N, Funkhouser R, Yusim K, Flynn M, Dalwani A, Bruno B, Foley B, Leitner T, Korber B (2005). Gateway to Tools of HIV and HCV Databases. pp. 49-79 in HIV Sequence Compendium 2005. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 06-0680

Calef C, Thakallapally R Kaslow R Mulligan M Korber BT (2001). ELF: An Analysis Tool for HIV-1 Peptides and HLA Types,pp. I-21-25 in HIV Molecular Immunology 2001. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Calef C,Mokili J, O'Connor DH, Watkins DI, Korber BT (2001). Numbering Positions in SIV Relative to SIVMM239. pp. 171-181 in HIV Sequence Compendium 2001. Edited by: Kuiken C, Foley B, Hahn B, Marx P, McCutchan F, Mellors JW, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Calef C, Thakallapally R, Lang D, Brander C, Goulder P, Yang O, Korber B (2000).PeptGen: Designing Peptides for Immunological Studies and Application to HIV Consensus Sequences. pp. I-63-100 in HIV Molecular Immunology Database 2000. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Carr JK, Foley BT, Leitner T, Salminen M, Korber B, McCutchan F (1998). Reference Sequences Representing the Principal Genetic Diversity of HIV-1 in the Pandemic. pp. III-10-19 in Human Retroviruses and AIDS 1998. Edited by: Korber B, Kuiken CL, Foley B, Hahn B, McCutchan F, Mellors JW, and Sodroski J. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Charini WA and Letvin NL (1997).CTL responses of Rhesus Monkeys to AIDS viruses: Epitopes and their restricting MHC Class-I Alleles. pp. IV-19-24 in HIV Molecular Immunology Database 1997. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Clark S, Calef C, Mellors J (2007). Mutations in Retroviral Genes Associated with Drug Resistance pp. 58-158 in HIV Sequence Compendium 2006/2007. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 07-4826

Clark S, Calef C, Mellors J (2005). Mutations in Retroviral Genes Associated with Drug Resistance. pp. 80-175 in HIV Sequence Compendium 2005. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 06-0680

Cormier EG and Dragic T (2000). An overview of HIV-1 coreceptor function and its inhibitors. pp. 19-34 in HIV Sequence Compendium 2000. Edited by: Kuiken C, McCutchan F, Foley B, Mellors JW, Hahn B, Mullins J, Marx P, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Cosimi L and Rosenberg ES (2000).The Characterization of HIV-1 Specific CD4+ T Helper Epitopes. pp. I-55-62 in HIV Molecular Immunology Database 2000. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Cullen BR (2001). Species and Tissue Tropisms of HIV-1: Molecular Basis and Phenotype Consequences. pp. 71-82 in HIV Sequence Compendium 2001. Edited by: Kuiken C, Foley B, Hahn B, Marx P, McCutchan F, Mellors JW, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

 

- D -

Darlix J-L, Lastra ML, Mely Y, and Roques B (2002).Nucleocapsid Protein Chaperoning of Nucleic Acids at the Heart of HIV Structure, Assembly and cDNA Synthesis. pp. 69-88 in HIV Sequence Compendium 2002. Edited by: Kuiken C, Foley B, Freed E, Hahn B, Korber B, Marx PA, McCutchan F, Mellors, JW, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 03-3564

DeGroot AS, Jesdale BM, Meister GE, Muni NI and Roberts CGP (1995). Prediction of T-Cell Epitopes for HIV Vaccine Development by Computer-Driven Algorithm. pp. IV-17-28 in HIV Molecular Immunology Database 1995. Edited by: Korber B, Brander C, Walker BD, Koup R, Moore JP, Haynes BF, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Doms RW and Moore JP (1997).HIV-1 Coreceptor Use: A Molecular Window into Viral Tropism. pp. IV-25-36 in HIV Molecular Immunology Database 1997. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Doms RW, Edinger AL, Moore JP (1998).Coreceptor Use by Primate Lentiviruses. pp. III-20-35 in Human Retroviruses and AIDS 1998. Edited by: Korber B, Kuiken CL, Foley B, Hahn B, McCutchan F, Mellors JW, and Sodroski J. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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Fenyo EM, Schuitemaker H, Asjo B, McKeating J (1997).The History of HIV-1 Biological Phenotypes Past, Present, and Future. pp. III-13-18 in Human Retroviruses and AIDS 1997. Edited by: Korber B, Hahn B, Foley B, Mellors JW, Leitner T, Myers G, McCutchan F and Kuiken CL. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Foley B (2002).Visualizing Lentiviral Protein 3D Structures. pp. 89-93 in HIV Sequence Compendium 2002. Edited by: Kuiken C, Foley B, Freed E, Hahn B, Korber B, Marx PA, McCutchan F, Mellors, JW, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 03-3564

Foley BT (2000). An overview of the molecular phylogeny of lentiviruses. pp. 35-43 in HIV Sequence Compendium 2000. Edited by: Kuiken C, McCutchan F, Foley B, Mellors JW, Hahn B, Mullins J, Marx P, Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Frahm N, Brander C, and Goulder PJR (2002).Total Assessment of HIV-Specific CTL Responses: Epitope Clustering, Processing Preferences, and the Impact of HIV Sequence Heterogeneity ,pp. 3-22 in HIV Molecular Immunology 2002. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 03-5816.

Frahm N, Goulder PJ and Brander C (2004). Broad HIV-1 Specific CTL Responses Reveal Extensive HLA Class I Binding Promiscuity of HIV-Derived, Optimally Defined CTL Epitopes. pp. 3-24 in HIV Immunology and HIV/SIV Vaccine Databases 2003, Edited by: Korber BT, Brander C, Haynes BF, Koup R, Moore JP, Walker BD, and Watkins DI. Published by: Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico. LA-UR 04-8162.

Frahm N, Linde C and Brander C (2007). Identification of HIV-Derived, HLA Class I Restricted CTL Epitopes: Insights into TCR Repertoire, CTL Escape and Viral Fitness. pp. 3-28 in HIV Molecular Immunology 2006/2007, Edited by: Korber BT, Brander C, Haynes BF, Koup R, Moore JP, Walker BD, and Watkins DI. Published by: Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico. LA-UR 07-4752.

Frahm N, Baker B and Brander C (2008). Identification and Optimal Definition of HIV-Derived Cytotoxic T-Lymphocyte (CTL) Epitopes for the Study of CTL Escape, Functional Avidity and Viral Evolution. pp. 3-24 in HIV Molecular Immunology 2008, Edited by: Korber BT, Brander C, Haynes BF, Koup R, Moore JP, Walker BD, and Watkins DI. Published by: Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico. LA-UR 08-05096.

 

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Gelderblom H (1997).Fine Structure of HIV and SIV. pp. IV-37-50 in HIV Molecular Immunology Database 1997. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Göttlinger HG (2001). HIV-1 Gag: a Molecular Machine Driving Viral Particle Assembly and Release. pp. 2-28 in HIV Sequence Compendium 2001. Edited by: Kuiken C, Foley B, Hahn B, Marx P, McCutchan F, Mellors JW, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Gordon S, Pandrea I, Dunham R, Apetrei C, Silvestri G (2005). The Call of the Wild: What Can Be Learned from Studies of SIV Infection of Natural Hosts? pp. 2-29 in HIV Sequence Compendium 2005. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 06-0680

Gorny MK and Zolla-Pazner S (2004). Human Monoclonal Antibodies that Neutralize HIV-1. pp 37-51 in HIV Immunology and HIV/SIV Vaccine Databases 2003, Edited by: Korber BT, Brander C, Haynes BF, Koup R, Moore JP, Walker BD, and Watkins DI. Published by: Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico. LA-UR 04-8162.

Graham BS (2000).Clinical trials of HIV vaccines. pp. I-20-38 in HIV Molecular Immunology Database 2000. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

- H -

Hammond J, Calef C, Larder B, Schinazi R and Mellors JW (1999). Mutations in Retroviral Genes Associated with Drug Resistance. pp. 542-593 in Human Retroviruses and AIDS 1999. Edited by: Kuiken CL, Foley B, Hahn B, Korber B, McCutchan F, Marx PA, Mellors JW, Mullins JI, Sodroski J, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Hammond J, Larder BA, Schinazi RF and Mellors JW (1997).Mutations in Retroviral Genes Associated with Drug Resistance. pp. III-206-249 in Human Retroviruses and AIDS 1997. Edited by: Korber B, Hahn B, Foley B, Mellors JW, Leitner T, Myers G, McCutchan F and Kuiken CL. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Holmes I (2000).Sequence homology search tools on the World Wide Web. pp. 44-53 in HIV Sequence Compendium 2000. Edited by: Kuiken C, McCutchan F, Foley B, Mellors JW, Hahn B, Mullins J, Marx P, Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Hunter E (1997).gp41, A Multifunctional Protein Involved in HIV Entry and Pathogenesis. pp. III-55-73 in Human Retroviruses and AIDS 1997. Edited by: Korber B, Hahn B, Foley B, Mellors JW, Leitner T, Myers G, McCutchan F and Kuiken CL. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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Karim SSA (2005).Microbicides for the Prevention of HIV Infection. pp. 30-40 in HIV Sequence Compendium 2005. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 06-0680

Karn J (2000).Tat, a novel regulator of HIV transcription and latency. pp. 2-18 in HIV Sequence Compendium 2000. Edited by: Kuiken C, McCutchan F, Foley B, Mellors JW, Hahn B, Mullins J, Marx P, Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Kaul R and Rowland-Jones SL (1999).Methods of Detection of HIV-specific CTL and Their Role in Protection Against HIV Infection. pp. IV-35-44 in HIV Molecular Immunology Database 1999. Edited by: Korber TM, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Kent KA and Bjorling E (1996).B-cell Epitopes on the Envelope Glycoproteins of SIV and HIV-2. pp. IV-5-21 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Klasse PJ (1996).Physicochemical Analyses of the Humoral Immune Response to HIV-1: Quantification of Antibodies, Their Binding to Viral Antigens and Neutralization of Viral Infectivity. pp. IV-22-49 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Koning F, van Rij R, Schuitemaker H (2002).Biological and Molecular Aspects of HIV-1 Coreceptor Usage. pp. 24-42 in HIV Sequence Compendium 2002. Edited by: Kuiken C, Foley B, Freed E, Hahn B, Korber B, Marx PA, McCutchan F, Mellors, JW, and Wolinsky S. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 03-3564

Korber B, Foley BT, Kuiken C, Pillai SK, Sodroski JG (1998).Numbering Positions in HIV Relative to HXB2CG. pp. III-102-111 in Human Retroviruses and AIDS 1998. Edited by: Korber B, Kuiken CL, Foley B, Hahn B, McCutchan F, Mellors JW, and Sodroski J. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Korber B, Loussert-Ajakai I, Blouin J and Saragosti S (1996).A Comparison of HIV-1 Group M and Group O Functional and Immunogenic Domains in the Gag p24 Protein and the C2V3 Region of the Envelope Protein. pp. IV-61-77 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Krebs FC, Hogan TH, Quiterio S, Gartner S, Wigdahl B (2001). Lentiviral LTR-directed Expression, Sequence Variation, and Disease Pathogenesis. pp. 29-70 in HIV Sequence Compendium 2001. Edited by: Kuiken C, Foley B, Hahn B, Marx P, McCutchan F, Mellors JW, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Kuiken C (2001). Reagents for HIV/SIV Vaccine Studies. pp. 182-190 in HIV Sequence Compendium 2001. Edited by: Kuiken C, Foley B, Hahn B, Marx P, McCutchan F, Mellors JW, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

Kuiken C and Korber B (1998).Sequence Quality Control. pp. III-80-90 in Human Retroviruses and AIDS 1998. Edited by: Korber B, Kuiken CL, Foley B, Hahn B, McCutchan F, Mellors JW, and Sodroski J. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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Labrjin AF and Parren PWHI (1999). Neutralizing Epitopes of HIV-1. pp. IV-18-34 in HIV Molecular Immunology Database 1999, 1999. Edited by: Korber TM, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Learn GH and Mullins JI (2003). The Microbial Forensic Use of HIV Sequences. pp. 22-37 in HIV Sequence Compendium 2003. Edited by: Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, and Korber B, editors. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, LA-UR number 04-7420.

Leitner T, Korber B, Daniels M, Calef C, Foley B (2005) . HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences, 2005. pp. 41-48 in HIV Sequence Compendium 2005. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 06-0680

Leitner T, Korber K, Robertson D, Gao F, Hahn B (1997). Updated Proposal of Reference Sequences of HIV-1 Genetic Subtypes. pp. III-19-24 in Human Retroviruses and AIDS 1997. Edited by: Korber B, Hahn B, Foley B, Mellors JW, Leitner T, Myers G, McCutchan F and Kuiken CL. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Llano A, Frahm N, Brander C (2009). How to Optimally Define Optimal Cytotoxic T Lymphocyte Epitopes in HIV Infection?. pp. I-3-5 in HIV Molecular Immunology 2009. Kuiken C, Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Wolinsky S, and Korber B, Eds. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Llano A, Williams, A, Overa, A, Silva-Arrieta, S, Brander C (2013). Best-Characterized HIV-1 CTL Epitopes: The 2013 Update. pp. 3-19 in HIV Molecular Immunology 2013. Yusim, K, Korber B, Brander, C, Barouch, D, de Boer, R, Haynes, BF, Koup, R, Moore, JP, Walker, BD, Eds. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 13-27758

Loffredo JT, Valentine LE, and Watkins DI (2007). Beyond Mamu-A*01+ Indian Rhesus Macaques: Continued Discovery of New MHC Class I Molecules that Bind Epitopes from the Simian AIDS Viruses. pp. 29-51 in HIV Molecular Immunology 2006/2007, Edited by: Korber BT, Brander C, Haynes BF, Koup R, Moore JP, Walker BD, and Watkins DI. Published by: Los Alamos National Laboratory, Theoretical Biology and Biophysics, Los Alamos, New Mexico. LA-UR 07-4752.

Lund O, Nielsen M, Kesmir C, Christensen JK, Lundegaard C, Worning P,and Brunak S (2002).Web-based Tools for Vaccine Design. pp. 45-51 in HIV Molecular Immunology 2002. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 03-5816.

Luzuriaga K and Sullivan JL (1997). HIV-1 Specific Cytotoxic T-Lymphocyte(CTL) responses in Pediatric Infection. pp. IV-12-18 in HIV Molecular Immunology Database 1997. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore J, Walker B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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Macke J, Calef C, Yusim K, Funkhouser R, Leitner T, Szinger J, Gaschen B, Abfalterer W, Mokili J, Foley B, Korber B, Kuiken C (2007). Search Tools in the HIV Databases pp. 37-57 in HIV Sequence Compendium 2006/2007. Edited by: Thomas Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, Korber B. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM. LA-UR 07-4826

Moore JP and Sodroski J (1996).Antibody Cross-Competition Analysis of the HIV-1 gp120 Envelope Glycoprotein and a summary of Selected Competition groups. pp. IV-1-4 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

Meyerhans A, Breinig T., Vartanian J-P, and Wain-Hobson S (2003). Forms and Function of Intracellular HIV DNA. pp. 14-21 in HIV Sequence Compendium 2003. Edited by: Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, and Korber B, editors. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, LA-UR number 04-7420.

Myers G and Lu H (1996).HIV and Molecular Mimicry. pp. IV-78-87 in HIV Molecular Immunology Database 1996. Edited by: Korber B, Brander C, Haynes B, Koup R, Moore JP, Walker BD, D'Sousa PM, Myers G. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.

 

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O'Connor DH, Allen TM, Watkins DI (2001). Where Have All The Monkeys Gone?: Evaluating SIV-Specific CTL in the Post-Mamu-A*01 Era,pp. I-26-42 in HIV Molecular Immunology 2001. Edited by: Korber BT, Brander C, Haynes BF, Koup R, Kuiken C, Moore JP, Walker BD, and Watkins D. Published by: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM, LA-UR 02-2877.

 

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Parikh U, Calef C, Clark S, Mellors JW (2003). Mutations in Retroviral Genes Associated with Drug Resistance. pp. 38-122 in HIV Sequence Compendium 2003. Edited by: Leitner T, Foley B, Hahn B, Marx P, McCutchan F, Mellors J, Wolinsky S, and Korber B, editors. Published by Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, LA-UR number 04-7420.

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