LANL HIV-DB Next Generation Sequence Archive

If you have a next-gen sequence set you would like to make available through the LANL database archive, you will need to provide:

1. A simple text file that will enable a user to understand your file organization and the data sources and sequence naming conventions that you use
2. A simple text file that lists the primers used and how they relate to the samples
3. A raw data sff file
4. The processed alignments you used for basic analysis in your publication
5. Contact information

If only one of #3 or #4 is readily available, we would still welcome the submission.

Our goal is to have a very easy to submit and accessible version of primate lentiviral or HIV/SIV antibody deep sequencing published data, given an expressed need for such a service at several Next-Gen sequencing workshops.

Please contact Brian Foley (btf@lanl.gov) and he will assist you in getting the files uploaded to our FTP site and listed on this page.

Fischer et al. 2010: Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing.
PubMed ID: 20808830