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HIV-1 Consensus and Ancestral Alignments

Files containing consensus and some ancestral sequences of all the major HIV subtypes are available for download here in four formats as alignments and as gapless files. The files include a consensus of each subtype, and an M-group consensus of all consensuses. The point of these files is to allow the user to have prebuilt consensus sequences for reagent design.

Download Instructions: from the table below select

Download:

format: fasta mase table pretty print

computer: Unix Mac PC


Nucleotides
Proteins

Region

Aligned
No gaps (unaligned)
Aligned
No gaps (unaligned)

GAG

POL

VIF

VPR

TAT

REV

VPU

ENV

NEF

last modified: Tue Oct 9 12:26 2007


Questions or comments? Contact us at seq-info@lanl.gov.

 
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