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Consensus and Ancestral Sequences ONLY for M and O Groups

(1) DNA Consensus and Ancestral Sequences for each protein.
......Sequences are not aligned.
......GAPS HAVE BEEN REMOVED to facilitate their use as reagents.
......Env Gag Nef Pol Rev Tat Vif Vpr Vpu Ltr

(2) PROTEIN Consensus and Ancestral Sequences for each protein.
......Sequences are not aligned.
......GAPS HAVE BEEN REMOVED to facilitate their use as reagents.
......Env Gag Nef Pol Rev Tat Vif Vpr Vpu

(3) TRANSLATION of DNA Consensus and Ancestral Sequences for each protein.
......Sequences are aligned.
......Combines and aligns sections (1) and (2) above.
......Env Gag Nef Pol Rev Tat Vif Vpr Vpu




Complete Alignments (all sequences used to make consensus sequences)

(4) ALL Protein-Coding DNA used to make Consensus Sequences for each protein.
......Ancestral Sequences have been added.
......Sequences are aligned.
......Env Gag Nef Pol Rev Tat Vif Vpr Vpu

(5) PROTEIN TRANSLATION of ALL Protein-Coding DNA used to make Consensus Sequences for each protein.
......Ancestral Sequences have been added.
......Sequences are aligned.
......Env Gag Nef Pol Rev Tat Vif Vpr Vpu

(6) COMPLETE GENOME (DNA)
......All complete genome sequences used to make Complete Genome Consensus Sequences.
......Ancestral sequences have been added.
......Sequences are aligned.
......Complete Genome Sequences

last modified: Tue Oct 9 11:27 2007


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