Purpose: This tool highlights matches and mismatches in a set of aligned amino acid sequences. It is particularly useful for visualizing potential recombination and hypermutation in closely related sequences, such as those isolated from a single patient.
Details: If the "Change Masters" button is not clicked, the first sequence in the file will be taken as the master sequence. In the case of multiple master sequences, the top n will be used. For descriptions of options and output, see Highlighter Explanation.