HIV Databases HIV Databases home HIV Databases home
HIV sequence database



HDent Sample Input File

The HDent input file is the output from a gel scanner, which consists of two columns of information:

Column 1 is the pixel/position in the scan.

Column 2 is the strength of the signal (intensity) at that position.

***IMPORTANT: You must separate data from each lane in your gel with a blank line.

Here is an example of what an input file should look like:


0   0
1   0
2   0
3   0
4   0
5   0
6   0
7   0
8   0
9   0
10  0
11  0
12  0
13  0
14  0
15  0
16  0
17  0
18  0
19  0
20  0
21  0
22  0
23  0
24  0
25  0
26  0
27  0
28  0
29  0
30  0
31  0
32  0
33  0
34  0
35  0
36  0
37  0
38  0
39  0
40  0
41  0
42  0
43  0
44  0
45  0
46  0
47  0
48  0
49  0
50  0
51  0
52  0
53  0
54  0
55  0
56  0
57  0
58  0
59  0
60  0
61  0
62  0
63  0
64  0
65  0
66  0
67  0
68  0
69  0
70  0
71  0
72  0
73  0
74  0
75  0
76  0
77  0
78  0
79  0
80  0
81  0
82  0
83  0
84  0
85  0
86  0
87  0
88  0
89  0
90  0
91  0
92  0
93  0
94  0
95  0
96  0
97  0
98  0
99  0
100 0
101 0
102 0
103 0
104 0
105 0
106 0
107 0
108 0
109 0
110 0
111 0
112 0
113 0
114 0
115 0
116 0
117 0
118 0
119 0
120 0
121 0
122 0
123 0
124 0
125 0
126 0
127 0
128 0
129 0.23
130 2.38
131 6.46
132 8.08
133 13.38
134 19.46
135 27.85
136 38.46
137 53.85
138 71.46
139 94.69
140 115.54
141 135.54
142 147.62
143 152.15
144 150.69
145 133.85
146 99.92
147 68.92
148 37.08
149 0
150 0
151 0
152 0
153 0

0   0
1   5.08
2   4.92
3   5.62
4   4.46
5   5.23
6   5.08
7   5.15
8   3.77
9   5.15
10  5.38
11  6
12  7.77
13  12.23
14  10.77
15  9.69
16  5.62
17  6.08
18  2.92
19  3.62
20  2.31
21  3.62
22  2.15
23  1.54
24  1.69
25  2.15
26  0.62
27  1.85
28  0
29  0.38
30  0
31  0.69
32  0
33  1.62
34  0
35  1.31
36  0.08
37  0
38  0.31
39  0.62
40  0
41  0
42  0
43  0
44  0
45  0.77
46  0
47  0
48  0
49  0.46
50  0
51  0.38
52  0
53  0
54  0
55  0.38
56  0
57  0.85
58  0
59  0
60  0
61  0
62  0
63  0
64  0
65  0.08
66  0
67  0
68  0
69  0
70  0
71  1.15
72  0
73  1.08
74  0.69
75  1.31
76  0
77  0.46
78  0
79  0
80  0
81  2
82  0.92
83  1.46
84  0
85  0
86  0
87  0.31
88  0
89  0
90  0
91  0
92  0
93  0.31
94  0.92
95  0.85
96  0.38
97  0
98  0.31
99  1.38
100 0
101 0.15
102 1.38
103 0.38
104 0.54
105 2
106 2.46
107 3.46
108 5.85
109 6.54
110 5.77
111 5.46
112 5.46
113 6.23
114 3.54
115 6.54
116 6.46
117 9
118 11.31
119 13
120 18.38
121 22.54
122 26.23
123 24.92
124 22.77
125 19.77
126 20.23
127 20
128 22.77
129 27.15
130 31.15
131 34.92
132 39.38
133 47.31
134 57.38
135 70.38
136 88.38
137 108.46
138 129.23
139 152
140 167.85
141 178
142 169.85
143 149.23
144 123.08
145 95.54
146 55.08
147 14.69
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   35.92
2   31.92
3   29.69
4   26.46
5   26
6   26
7   30.38
8   29.92
9   25.92
10  19.62
11  18.15
12  17.69
13  15.31
14  14.92
15  14.69
16  12.77
17  13.54
18  11.77
19  12.69
20  12.31
21  11.08
22  9.85
23  9.69
24  9.08
25  10.54
26  9.54
27  10.54
28  8.85
29  9.08
30  9.23
31  9.85
32  7.85
33  8.54
34  7.77
35  8.46
36  8
37  10.15
38  10.23
39  12.54
40  12.31
41  17.69
42  20.08
43  25.54
44  31.46
45  47.54
46  58.77
47  62.23
48  46
49  31.77
50  21.62
51  17.85
52  14.46
53  14.85
54  15
55  14.77
56  13.77
57  16.31
58  16.46
59  23.77
60  26.62
61  30.08
62  31.92
63  40.77
64  41.92
65  36
66  20.54
67  14.62
68  10.85
69  11
70  10.15
71  9.62
72  11.92
73  12.62
74  13.69
75  14.85
76  15.85
77  18.85
78  20.23
79  23.62
80  26.08
81  29
82  30.23
83  34.77
84  40.54
85  48.85
86  55.08
87  68.62
88  76
89  75.69
90  62.69
91  49.69
92  39.15
93  29.92
94  26.08
95  24.46
96  21.23
97  20.77
98  20.15
99  18.31
100 18.23
101 20.08
102 19.85
103 23.08
104 23
105 26.69
106 27.46
107 30.69
108 33.69
109 40.54
110 46.85
111 56.54
112 66.62
113 78.15
114 81
115 81.38
116 76.69
117 75.08
118 74.46
119 72.54
120 73.54
121 79.31
122 80.62
123 77.77
124 75.15
125 72.62
126 74.15
127 81.15
128 87
129 94.62
130 97.92
131 100.31
132 99.23
133 102.69
134 109
135 118.77
136 134
137 152.92
138 168.31
139 187
140 199.62
141 203.69
142 176.23
143 132.69
144 82.38
145 31.46
146 0.46
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   9.85
2   6.77
3   7.62
4   6.08
5   6.15
6   5.54
7   6.46
8   5.54
9   6.54
10  6.54
11  6.46
12  4.77
13  5.38
14  3.85
15  4.54
16  3.54
17  4.08
18  3.38
19  4.08
20  3.31
21  3.69
22  2.46
23  4.08
24  3.38
25  4.38
26  3.15
27  5.15
28  4.77
29  4
30  3.31
31  5.92
32  4.38
33  7.15
34  6.15
35  9.92
36  13.15
37  17.23
38  15
39  13
40  9
41  7.92
42  5.31
43  6
44  5.77
45  7.15
46  7.31
47  8.77
48  9.77
49  13.77
50  16.54
51  24.62
52  24.62
53  24
54  16.92
55  14.62
56  10.85
57  12.31
58  10.38
59  12.15
60  11.85
61  11.54
62  8.23
63  8
64  7.69
65  8.31
66  11.31
67  15
68  17.62
69  19.08
70  21
71  21
72  21.46
73  24
74  28.38
75  36
76  39.46
77  34.08
78  27.38
79  22.69
80  17.92
81  11.54
82  5.62
83  5.54
84  4.85
85  6.77
86  7.08
87  8.85
88  12.08
89  16.54
90  21.08
91  30.77
92  39
93  47.54
94  47.23
95  49.08
96  49.77
97  52.08
98  47.62
99  40.38
100 35.31
101 34.23
102 30.62
103 29.08
104 27.23
105 27
106 28.69
107 33.15
108 36.85
109 41.15
110 42.38
111 45
112 44.54
113 41.62
114 36.23
115 31.46
116 29
117 28
118 26.38
119 29.08
120 29.77
121 35.46
122 40.77
123 44.62
124 42.77
125 38
126 34.77
127 34.92
128 33.62
129 36.62
130 39.46
131 44.62
132 51.08
133 60.15
134 67.54
135 76.77
136 84.46
137 100.62
138 107.92
139 101.92
140 77.23
141 50.15
142 16.23
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   11.85
2   10.23
3   9.54
4   10.38
5   13.23
6   11
7   10.54
8   9.69
9   9.92
10  8.54
11  10.38
12  7.23
13  8.15
14  6.54
15  8.69
16  7.08
17  7.23
18  6.85
19  10
20  5.77
21  5.85
22  4.62
23  6.69
24  5.23
25  7.92
26  6.54
27  7.31
28  5.08
29  6.31
30  5
31  6.38
32  4.38
33  5.46
34  4.31
35  4
36  3.31
37  6.08
38  3.92
39  3.85
40  4.38
41  5.46
42  3.46
43  6.08
44  5.08
45  6.92
46  6.15
47  7.54
48  6.23
49  8.08
50  7.23
51  9.46
52  10.77
53  13.92
54  12.54
55  15.62
56  14.62
57  15.08
58  14.08
59  17.62
60  18.38
61  21.23
62  23.31
63  27.46
64  29.69
65  37.38
66  46.38
67  56.85
68  63.38
69  68.46
70  73.85
71  83.69
72  103
73  131.85
74  150.54
75  147.77
76  124.31
77  95.92
78  67.85
79  56.08
80  55.77
81  65
82  83
83  98.77
84  94.54
85  71.38
86  38.62
87  16.54
88  2.46
89  0
90  0
91  0
92  0
93  0
94  0
95  0
96  0
97  0
98  0
99  0
100 0
101 0
102 0
103 0
104 0
105 0
106 0
107 0.69
108 1.54
109 4.92
110 4.69
111 7
112 6.08
113 7.31
114 7.31
115 8
116 7.23
117 10.31
118 12.38
119 15.69
120 17.08
121 17.69
122 16.23
123 17
124 19.31
125 22.46
126 25.08
127 29.46
128 34.85
129 43.23
130 50.31
131 61
132 70.38
133 80.69
134 91.85
135 108.08
136 129
137 152.69
138 168.15
139 176.08
140 169.46
141 147
142 101.54
143 53.31
144 9.46
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   9.08
2   6.54
3   6.92
4   7.23
5   7.46
6   7.15
7   8.77
8   8.08
9   10.77
10  9.85
11  11.46
12  10
13  12.54
14  11.46
15  14.62
16  14.92
17  19.54
18  20.92
19  26.54
20  30.38
21  41.08
22  53.08
23  66.31
24  65.92
25  58.85
26  52.23
27  46.62
28  43.85
29  42.46
30  37
31  32.62
32  25.77
33  26
34  23.54
35  24.54
36  22.69
37  25.15
38  26.46
39  29.92
40  33.38
41  41.38
42  47.46
43  55.54
44  58.92
45  67.92
46  67.77
47  74
48  78.62
49  83.62
50  85.08
51  87.54
52  86.23
53  87
54  79.54
55  74.62
56  67.77
57  67
58  62.46
59  61.31
60  57.38
61  58.23
62  60.62
63  62.77
64  63.15
65  66.38
66  69.31
67  75.15
68  79.69
69  85.54
70  84.62
71  88.15
72  87.69
73  86.62
74  81.38
75  75.62
76  67.92
77  68.85
78  69.46
79  70
80  68.23
81  69.31
82  72.15
83  76.92
84  78.54
85  77.62
86  77.15
87  79.08
88  82.85
89  88.92
90  89
91  91.62
92  92.23
93  93.31
94  95.77
95  95.92
96  96.92
97  92.31
98  86.23
99  80.92
100 68.92
101 55
102 44.38
103 38.38
104 36.08
105 37.69
106 38.92
107 39.54
108 39.54
109 39.08
110 39.92
111 44.31
112 45.23
113 46
114 42.69
115 38.23
116 35.46
117 36.08
118 39.38
119 44.77
120 46.46
121 50.23
122 51.23
123 51.38
124 46.38
125 44.08
126 41.69
127 43.62
128 49.85
129 56.15
130 64.85
131 73.77
132 80.69
133 84.92
134 84.15
135 74.31
136 53.62
137 27.69
138 5
139 0
140 0
141 0
142 0
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   19.85
2   17.46
3   18.69
4   17.54
5   19
6   17.69
7   19.85
8   19.31
9   17.85
10  18.08
11  19.92
12  18.15
13  21.46
14  19.23
15  21.85
16  21.15
17  21.54
18  21.92
19  23.31
20  22.92
21  26.08
22  25.31
23  29.15
24  29.69
25  31.92
26  35.54
27  39
28  39.08
29  44.85
30  46.54
31  54.15
32  61.15
33  73.23
34  86.38
35  108.62
36  132.77
37  160.92
38  183.54
39  197.62
40  198.46
41  187.85
42  177.85
43  170.15
44  165.54
45  170.92
46  172.38
47  176.85
48  178.23
49  190.69
50  201.23
51  215.46
52  223.69
53  227.54
54  228.69
55  229.46
56  229.62
57  230.38
58  230.54
59  230.92
60  229.08
61  223.92
62  205.92
63  180.92
64  157.69
65  143.62
66  134.54
67  132.92
68  132.23
69  133.08
70  132.85
71  130.46
72  128.46
73  128
74  125.85
75  129.77
76  133.85
77  137.15
78  124
79  102.77
80  76.85
81  60.77
82  49.85
83  46.23
84  45.46
85  48.46
86  45.38
87  40.62
88  34.08
89  30.54
90  29.54
91  32.85
92  33.85
93  33.85
94  33.92
95  35.69
96  37.15
97  41.85
98  48.62
99  58.62
100 64.69
101 64.08
102 58.92
103 49.38
104 41.08
105 37.31
106 33.77
107 34.77
108 38
109 42.77
110 46.85
111 55.62
112 60.23
113 62.62
114 63.38
115 63.15
116 64.15
117 60.62
118 61
119 59.92
120 57.15
121 57.69
122 56.46
123 57.23
124 59.85
125 63.69
126 69.62
127 80.23
128 87.08
129 94.69
130 98.77
131 104.69
132 108.15
133 119.77
134 131.46
135 140.46
136 142.92
137 137.38
138 128.69
139 122.92
140 102.23
141 65.62
142 23.23
143 0.23
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   14.08
2   14.62
3   15.08
4   16.31
5   16.23
6   17.54
7   18.46
8   17.77
9   18.69
10  18.69
11  21.62
12  20.38
13  21.69
14  20.69
15  23.54
16  24.23
17  25.08
18  24.62
19  26.85
20  26.46
21  29.54
22  29.46
23  33.38
24  35.77
25  38.31
26  38.31
27  41.62
28  41.85
29  47.69
30  51.54
31  58.62
32  61.08
33  67.46
34  70.85
35  77.46
36  80
37  84.15
38  84.77
39  87
40  89.77
41  95.46
42  100.23
43  107.46
44  115.54
45  123.77
46  123
47  124.08
48  122.85
49  124.77
50  126.77
51  131.62
52  130
53  133.08
54  131.77
55  132.77
56  129.31
57  128.31
58  122.31
59  121.85
60  118.08
61  118.85
62  120.62
63  122.08
64  120.77
65  121
66  120.23
67  119.38
68  116.38
69  113
70  107.62
71  105.15
72  98.15
73  93.85
74  90.31
75  89.31
76  87.69
77  85.77
78  83.15
79  82.46
80  79.08
81  79.92
82  78.15
83  73.31
84  68.62
85  67.15
86  65.38
87  66.15
88  67
89  73
90  73.62
91  74.69
92  74.31
93  69.46
94  66.23
95  64.38
96  62.69
97  60.08
98  57.23
99  58
100 54.15
101 53.92
102 52.62
103 49
104 44.85
105 39.08
106 35.69
107 34.77
108 30
109 28
110 26
111 26.31
112 24.92
113 24.38
114 21.54
115 19.85
116 18.62
117 17.85
118 14.46
119 15.46
120 14.92
121 16
122 15.15
123 15.77
124 17.08
125 16.62
126 15.92
127 18.46
128 21
129 23.92
130 25.15
131 23.77
132 15.77
133 9.69
134 1.15
135 0
136 0
137 0
138 0
139 0
140 0
141 0
142 0
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   11.38
2   12
3   12.08
4   10.62
5   11.92
6   12
7   12.62
8   11.54
9   13.08
10  11.54
11  10.85
12  11.69
13  13.77
14  12.46
15  15.92
16  14.77
17  16
18  15.15
19  18
20  17.92
21  17.54
22  17.23
23  20.15
24  19
25  22.15
26  21.46
27  23.69
28  22.92
29  25.77
30  24
31  24.46
32  25.85
33  28.77
34  29.62
35  33.23
36  34
37  33.15
38  31.15
39  34.85
40  35.15
41  37.77
42  38.77
43  39.31
44  40.85
45  45.15
46  42.69
47  44.46
48  44.69
49  47.15
50  48.85
51  53.23
52  57.69
53  66.15
54  74.77
55  84.54
56  86.85
57  90.77
58  89.62
59  91.77
60  93.31
61  97.46
62  95.23
63  95.69
64  94.08
65  93.77
66  92.08
67  90.38
68  88
69  91.77
70  99.54
71  116.77
72  124
73  118.85
74  99.92
75  81
76  64.62
77  57.15
78  51.69
79  51
80  46
81  41.54
82  37.23
83  38.54
84  36.54
85  37.62
86  35.31
87  32.62
88  31.08
89  29.23
90  27.46
91  29.54
92  27.54
93  29.85
94  27.54
95  28.46
96  26.77
97  24.08
98  20.08
99  19.92
100 17.62
101 17.46
102 15.54
103 16.46
104 15
105 14.69
106 14.08
107 12.54
108 11.54
109 10.85
110 8.31
111 7.08
112 5.69
113 7.54
114 5.77
115 6.62
116 6.23
117 8.69
118 11
119 13.69
120 16.62
121 17.62
122 14.69
123 14.54
124 10.15
125 11.23
126 10
127 14
128 16.31
129 20.92
130 26.46
131 35
132 42.23
133 49.62
134 53.38
135 49.54
136 35.31
137 16.38
138 0.38
139 0
140 0
141 0
142 0
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   11.62
2   11.85
3   11.77
4   10.23
5   11.46
6   10.69
7   12.62
8   10.85
9   11.15
10  11.54
11  13.08
12  13.31
13  13.92
14  13.46
15  16.15
16  17.08
17  19.15
18  17.92
19  20.08
20  18.54
21  20.31
22  18.69
23  20.54
24  20
25  22.38
26  24.38
27  26.46
28  27.77
29  30
30  28.85
31  29.85
32  28.69
33  30.62
34  31.69
35  36.85
36  38.77
37  43.38
38  48.54
39  55
40  60.38
41  66.23
42  67.31
43  70.85
44  72
45  74.92
46  76.69
47  76.77
48  78
49  82.92
50  84.46
51  89.54
52  89.92
53  92.77
54  95.23
55  97.54
56  98.38
57  101.46
58  99.15
59  105.08
60  106.85
61  109.92
62  110.77
63  107.54
64  101
65  100.08
66  97.54
67  94.62
68  92.69
69  88.69
70  84.46
71  83.15
72  78.46
73  79.46
74  77.69
75  76.54
76  76.85
77  74.85
78  73.62
79  76.69
80  74.08
81  75.38
82  75.46
83  75.62
84  76.69
85  84.69
86  86.08
87  85.38
88  79.08
89  72.77
90  69.31
91  66.62
92  64.15
93  65.23
94  62.92
95  59.92
96  55.15
97  53.77
98  52.77
99  50.08
100 49.85
101 50.08
102 48
103 49.08
104 48.38
105 48.23
106 48.69
107 46.69
108 44.38
109 42.46
110 40.31
111 36.54
112 33.08
113 26.08
114 19.54
115 16.46
116 14.85
117 17.62
118 19.46
119 22
120 20.31
121 23.31
122 24
123 24.31
124 26.38
125 28.77
126 30.92
127 35.85
128 39.69
129 43.31
130 47.08
131 50.46
132 54.62
133 63.23
134 69.15
135 76.92
136 79.69
137 69.69
138 39.38
139 8.54
140 0
141 0
142 0
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

0   0
1   0.31
2   0.54
3   1.69
4   0.69
5   0
6   0.77
7   3.31
8   1.46
9   2.85
10  1.38
11  2.92
12  2.46
13  3.62
14  3.46
15  4.38
16  3
17  5.46
18  6.85
19  9.31
20  8.69
21  10.85
22  10.54
23  13.23
24  12.54
25  15.31
26  16.15
27  19.69
28  21.46
29  25.23
30  23.77
31  26.85
32  23.69
33  25.92
34  27.23
35  30.85
36  31.23
37  35.08
38  38.23
39  40.77
40  40.38
41  44.85
42  46.31
43  49.08
44  46.92
45  47.92
46  45.62
47  45.46
48  44.46
49  46.08
50  46.08
51  48.69
52  46.69
53  48.69
54  49.31
55  48.62
56  48
57  49.08
58  46.31
59  45.92
60  44.31
61  45.62
62  43.23
63  44.23
64  42.23
65  43.85
66  41.23
67  41.62
68  38.15
69  35.85
70  34.69
71  33.69
72  34.15
73  32.46
74  32.69
75  33.46
76  30.85
77  31.54
78  28.08
79  27.69
80  25.31
81  23.77
82  21.08
83  21
84  19.62
85  17.23
86  17.38
87  17.15
88  15.69
89  15.15
90  15.69
91  15
92  15.92
93  14.92
94  12.92
95  14.62
96  13.31
97  13.92
98  12.23
99  10.08
100 9.54
101 7.62
102 6.85
103 6
104 2.54
105 1.31
106 0
107 0.15
108 0
109 0
110 0
111 0
112 0
113 0
114 0
115 0
116 0
117 0
118 0
119 0
120 0
121 0
122 0
123 0
124 0
125 0
126 0
127 0
128 0
129 1.23
130 0.23
131 1.77
132 0
133 0
134 0
135 0
136 0
137 0
138 0
139 0
140 0
141 0
142 0
143 0
144 0
145 0
146 0
147 0
148 0
149 0
150 0
151 0
152 0
153 0

last modified: Tue Oct 9 16:38 2007


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Los Alamos National Security, LLC, for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2012 LANS LLC All rights reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health