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HIV sequence database



Gap Strip Tool

Purpose: This tool takes a nucleotide aligment and removes all columns that contain one or more gaps.

Using the form below, browse for your alignment file or paste it into the space provided. If your alignment uses gap characters other than "-" enter them in the Gap character(s) box.

Input
Paste alignment
or upload your alignment file
Options
Gap character(s)
Deleted columns should be Shown Preserved
Preserve codon alignment check to delete columns only in groups of 3
Reading frame of alignment

last modified: Tue Jun 23 16:44 2009


Questions or comments? Contact us at seq-info@lanl.gov.

 
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