HIV Databases HIV Databases home HIV Databases home
HIV sequence database



Epilign

This page is no longer maintained. You will be redirected to the QuickAlign tool page.

Purpose: Epilign generates an alignment of your amino acid sequence against our ready-made alignments.

Details: This tool can be used to align epitopes, functional domains, or any protein region of interest. An analogous tool, PrimAlign, performs the same function for nucleotide sequences.

Input should consist of a single amino acid sequence. For cases where alignment of C-terminal residues is critical, Epilign offers an option to delete gaps from the alignment; see Epilign Explanation.

Input
Paste your input here
or upload your file

Options
Squeeze gaps (this will shift your sequence toward the C terminus)
last modified: Thu Dec 24 10:50 2009


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Los Alamos National Security, LLC, for the U.S. Department of Energy's National Nuclear Security Administration
Copyright © 2005-2012 LANS LLC All rights reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health