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Advanced Consensus Maker

Purpose: Make a consensus, or multiple consensuses of blocks of sequences in an alignment using parameters you specify.

Usage: Browse for your alignment file or paste it into the window, adjust the consensus options, and click "Run". For details about the various options, see Advanced Consensus Maker Explanation.

Input
Paste your alignment

Or upload your file
Squeeze gaps in input  Yes  No      Gap character
Output Options
Do consensus for each block  Yes  No
Minimum number of sequences for consensus
Make a consensus of consensuses  Yes  No
Show both, consensus + alignment  Yes  No
Show number of sequences in consensus  Yes  No
Output format  Pretty  Output aligned  Like input
Consensus-making Options
Unanimous value
Majority value
Use most common character  Yes  No
Break ties with  IUPAC characters  Letters in whole column

Character set for making the consensus
nucleotides
amino acids
   Or check here to use any (all) characters
last modified: Thu Jun 19 15:28 2014


Questions or comments? Contact us at seq-info@lanl.gov.

 
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