Notes on the sequence alignment

We include here a sequence alignment that contains the sequences of the Envelopes used reference panel, aligned with and the standard subtype reference sequences from the Los Alamos database.

The sequences names include, separated by periods:

  1. The subtype
  2. The two letter country code indicating the country of isolation, http://www.hiv.lanl.gov/content/hiv-db/HTML/databasecountrycode.html
  3. The year of isolation
  4. The sequence ID
  5. The Accession number

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