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Improvements to Pixel
The Pixel tool provides quality control for alignments by producing a graphic image with colored pixels corresponding to nucleotide or amino acid residues. A new Advanced version of the tool provides new color schemes and allows users more control over the appearance of the image. 07 July 2016
Improvements to Highlighter
The Highlighter tool provides a graphical view of sequence matches, mismatches, transitions, transversions, silent, and non-silent mutations in protein or nucleotide alignments. The major new feature is the highlighting of glycosylation motifs in amino acid alignments. Minor improvements include the ability to change the width of the tic marks, revised logic for transition/transversion highlighting, and new options for matches highlighting. 06 July 2016