Found 16 matching records:
HXB2 Location | Gag(156-164) | Gag Epitope Map
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Epitope |
VKVVEEKAF
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Epitope Alignment | ||||
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Epitope Name | VF-9 | |||||
Species (MHC/HLA) | human(B*15:01, B*15:03) |
Showing all: 1 variant(s).
Variant ID. | 3522 |
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Epitope Seq. | VKVVEEKAF |
Variant Seq. | VKViEEKAF |
Mutations | V/I |
Epitope Location | V4I |
HXB2 Location | V27I |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | Variant VKVIEEKAF , VF-9, had natural processed epitope forms for subtype C, 0% 4h post constitutive proteasome 13% after processing 4h through immuno proteasomes. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(156-164) | Gag Epitope Map
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Epitope |
VKVIEEKAF
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*15:01, B*15:03) |
Showing all: 1 variant(s).
Variant ID. | 3524 |
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Epitope Seq. | VKVIEEKAF |
Variant Seq. | VKVvEEKAF |
Mutations | I/V |
Epitope Location | I4V |
HXB2 Location | I27V |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Variant VKVvEEKAF , VF-9, was a natural processed epitope form for subtype C. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(167-175) | Gag Epitope Map
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Epitope |
EVIPMFSAL
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Epitope Alignment | ||||
Variants |
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Epitope Name | EL-9 | |||||
Species (MHC/HLA) | human(A*26, A*26:01, A*26:02, A*26:03, C*01, C*01:02) |
Showing all: 1 variant(s).
Variant ID. | 3525 |
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Epitope Seq. | EVIPMFSAL |
Variant Seq. | EVIPMFtAL |
Mutations | S/T |
Epitope Location | S7T |
HXB2 Location | S41T |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | Variant EVIPMFtAL was of subtype C with natural processed form, AWVKVVEEKAFSPEVIPMFtAL.. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(167-175) | Gag Epitope Map
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Epitope |
EVIPMFTAL
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*26, A*26:01, A*26:02, A*26:03, C*01, C*01:02) |
Showing all: 1 variant(s).
Variant ID. | 3526 |
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Epitope Seq. | EVIPMFTAL |
Variant Seq. | EVIPMFsAL |
Mutations | T/S |
Epitope Location | T7S |
HXB2 Location | T173S |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Variant EVIPMFsA, is from fragment F1, subtype B, its natural processed form was AWVKVVEEKAFSPEVIPMFTAL. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(240-249) | Gag Epitope Map
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Epitope |
TSTLQEQIAW
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*57, B*57:01, B*57:03, B*58, B*58:01, B*63) |
Showing all: 1 variant(s).
Variant ID. | 3527 |
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Epitope Seq. | TSTLQEQIAW |
Variant Seq. | TSTLQEQIgW |
Mutations | A/G |
Epitope Location | A9G |
HXB2 Location | A248G |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Variant TSTLQEQIgW, is the subtype B form of TW10. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(240-249) | Gag Epitope Map
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Epitope |
TSTLQEQIGW
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Epitope Alignment | ||||
Variants |
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Epitope Name | TW10 | |||||
Species (MHC/HLA) | human(B*57:01, B*57:03) |
Showing all: 1 variant(s).
Variant ID. | 3457 |
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Epitope Seq. | TSTLQEQIGW |
Variant Seq. | TSTLQEQIaW |
Mutations | G/A |
Epitope Location | G9A |
HXB2 Location | G248A |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | The subtype C variant TSTLQEQIaW (G116A) was absent from B-infected patients carrying alleles B*3501, B*5802, and B*63. The natural processed form was AGTTSTLQEQIAW, 2% 4h post-constitutive- and 6% post-immuno-proteasomal processing. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(254-262) | Gag Epitope Map
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Epitope |
PPIPVGEIY
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Epitope Alignment | ||||
Variants |
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Epitope Name | PY-9 | |||||
Species (MHC/HLA) | human(B*35, B*35:01, B*35:02, B*53) |
Showing all: 1 variant(s).
Variant ID. | 3528 |
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Epitope Seq. | PPIPVGEIY |
Variant Seq. | PPIPVGdIY |
Mutations | E/D |
Epitope Location | E7D |
HXB2 Location | E128D |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | Subtype C variant, PPIPVGdIY, was processed from natural forms IAWMTSNPPIPVGDIY, MTSNPPIPVGDIY, TSNPPIPVGDIY, SNPPIPVGDIY. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(254-262) | Gag Epitope Map
View variants at this location |
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Epitope |
PPIPVGDIY
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*35, B*35:01, B*35:02, B*53) |
Showing all: 1 variant(s).
Variant ID. | 3529 |
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Epitope Seq. | PPIPVGDIY |
Variant Seq. | PPIPVGeIY |
Mutations | D/E |
Epitope Location | D7E |
HXB2 Location | D128E |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Subtype B variant PPIPVGeIY was processed naturally from IGWMTNNPPIPVGEIY, MTNNPPIPVGEIY, TNNPPIPVGEIY, NNPPIPVGEIY, PPIPVGEIY. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-266) | Gag Epitope Map
View variants at this location |
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Epitope |
GEIYKRWI
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Epitope Alignment | ||||
Variants |
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Epitope Name | GI-8 | |||||
Species (MHC/HLA) | human(B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3531 |
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Epitope Seq. | GEIYKRWI |
Variant Seq. | GdIYKRWI |
Mutations | E/D |
Epitope Location | E2D |
HXB2 Location | E128D |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | Subtype C variant, GdIYKRWI's, natural processed form was TSNPPIPVGDIYKRWI |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-266) | Gag Epitope Map
View variants at this location |
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Epitope |
GDIYKRWI
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3530 |
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Epitope Seq. | GDIYKRWI |
Variant Seq. | GeIYKRWI |
Mutations | D/E |
Epitope Location | D2E |
HXB2 Location | D128E |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Subtype B variant, GeIYKRWI's, natural processed forms were TNNPPIPVGEIYKRWI (proline 122, 123, 125) and VGEIYKRWI. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-267) | Gag Epitope Map
View variants at this location |
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Epitope |
GEIYKRWII
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Epitope Alignment | ||||
Variants |
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Epitope Name | GI-9 | |||||
Species (MHC/HLA) | human(B*08, B*08:01, B*40) |
Showing all: 1 variant(s).
Variant ID. | 3532 |
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Epitope Seq. | GEIYKRWII |
Variant Seq. | GdIYKRWII |
Mutations | E/D |
Epitope Location | E2D |
HXB2 Location | E128D |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | GdIYKRWII, the subtype C variant, had natural processed form TSNPPIPVGDIYKRWI. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-267) | Gag Epitope Map
View variants at this location |
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Epitope |
GDIYKRWII
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(B*08, B*08:01, B*40) |
Showing all: 1 variant(s).
Variant ID. | 3533 |
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Epitope Seq. | GDIYKRWII |
Variant Seq. | GeIYKRWII |
Mutations | D/E |
Epitope Location | D2E |
HXB2 Location | D128E |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | GeIYKRWII is the Subtype B variant. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-268) | Gag Epitope Map
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Epitope |
GEIYKRWIIL
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Epitope Alignment | ||||
Variants |
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Epitope Name | GL-10 | |||||
Species (MHC/HLA) | human(A*24, B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3536 |
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Epitope Seq. | GEIYKRWIIL |
Variant Seq. | GdIYKRWIIL |
Mutations | E/D |
Epitope Location | E2D |
HXB2 Location | E128D |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining |
Note | Subtype C-specific variant is GdIYKRWIIL. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(259-268) | Gag Epitope Map
View variants at this location |
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Epitope |
GDIYKRWIIL
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Epitope Alignment | ||||
Variants |
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Species (MHC/HLA) | human(A*24, B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3537 |
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Epitope Seq. | GDIYKRWIIL |
Variant Seq. | GeIYKRWIIL |
Mutations | D/E |
Epitope Location | D2E |
HXB2 Location | D128E |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | The subtype B-specific variant is GDIYKRWIIL. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(260-267) | Gag Epitope Map
View variants at this location |
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Epitope |
EIYKRWII
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Epitope Alignment | ||||
Variants |
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Epitope Name | EI-8 | |||||
Species (MHC/HLA) | human(B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3534 |
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Epitope Seq. | EIYKRWII |
Variant Seq. | dIYKRWII |
Mutations | E/D |
Epitope Location | E1D |
HXB2 Location | E128D |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | B |
Variant Subtype | C |
Method | Intracellular cytokine staining, Other |
Note | Subtype C specific variant dIYKRWII had no determinable natural processed forms. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
HXB2 Location | Gag(260-267) | Gag Epitope Map
View variants at this location |
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Epitope |
DIYKRWII
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Epitope Alignment | ||||
Variants |
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Epitope Name | DI-8 | |||||
Species (MHC/HLA) | human(B*08, B*08:01) |
Showing all: 1 variant(s).
Variant ID. | 3535 |
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Epitope Seq. | DIYKRWII |
Variant Seq. | eIYKRWII |
Mutations | D/E |
Epitope Location | D1E |
HXB2 Location | D128E |
Mutation Type | A: HLA association P: processing |
Epitope Subtype | C |
Variant Subtype | B |
Method | Intracellular cytokine staining |
Note | Subtype B specific variant eIYKRWII had no determinable natural processed forms. |
Tenzer2014 Stefan Tenzer, Hayley Crawford, Phillip Pymm, Robert Gifford, Vattipally B. Sreenu, Mirjana Weimershaus, Tulio de Oliveira, Anne Burgevin, Jan Gerstoft, Nadja Akkad, Daniel Lunn, Lars Fugger, John Bell, Hansjörg Schild, Peter van Endert, and Astrid K. N. Iversen. HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification. Cell Rep., 7(2):448-463, 24 Apr 2014. PubMed ID: 24726370. Show all entries for this paper.
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