SIV Epitope Summary

Download SIV epitope summary.

This is a list of SIV epitopes from the 2006 compendium review article Beyond Mamu-A*01+ Indian Rhesus Macaques: Continued Discovery of New MHC Class I Molecules that Bind Epitopes from the Simian AIDS Viruses by Loffredo et al. (click for PDF). At the present time, these epitopes are not incorporated into our searchable databases.

MHC Class	Virus	Species	Position	Name	Sequence	Restricting Molecule
Class I	SIVmac239	Rhesus	Gag 149-157	LW9	LSPRTLNAW	Mamu-A*01
Class I	SIVmac239,SIVsmE660,SIVsmH4	Rhesus	Gag 181-189	CM9	CTPYDINQM	Mamu-A*01
Class I	SIVmac239	Rhesus	Gag 254-262	QI9	QNPIPVGNI	Mamu-A*01
Class I	SIVmac239	Rhesus	Gag 372-379	LF8	LAPVPIPF	Mamu-A*01
Class I	SIVmac239	Rhesus	Pol 147-156	LV10	LGPHYTPKIV	Mamu-A*01
Class I	SIVmac239	Rhesus	Pol 592-600	QV9	QVPKFHLPV	Mamu-A*01
Class I	SIVmac239,mac251,SHIV-89.6,-HXBc2	Rhesus	Pol 625-633	SV9	STPPLVRLV	Mamu-A*01
Class I	SIVmac251	Rhesus	Pol 696-704	SV9	SGPKTNIIV	Mamu-A*01
Class I	SIVmac239	Rhesus	Pol 696-704	SV9	SGPKANIIV	Mamu-A*01
Class I	SIVmac239	Rhesus	Env 233-240	CL8	CAPPGYAL	Mamu-A*01
Class I	SIVmac239,SIVsmE660,SIVsmH4	Rhesus	Env 233-241	CL9	CAPPGYALL	Mamu-A*01
Class I	SHIV-89.6,SHIV-HXBc2	Rhesus	Env 397-405	YI9	YAPPISGQI	Mamu-A*01
Class I	SIVmac239	Rhesus	Env 620-628	TL9	TVPWPNASL	Mamu-A*01
Class I	SIVsmH4,SIVsmE660	Rhesus	Env 620-628	TL9	TVPWPNETL	Mamu-A*01
Class I	SIVmac239	Rhesus	Env 726-735	ST10	SSPPSYFQQT	Mamu-A*01
Class I	SIVmac251	Rhesus	Env 727-737	ST10	SPPSYFQTHT	Mamu-A*01
Class I	SIVmac239	Rhesus	Tat 28-35	SL8	STPESANL	Mamu-A*01
Class I	SIVmac251	Rhesus	Tat 28-35	TL8	TTPESANL	Mamu-A*01
Class I	SIVmac239	Rhesus	Vif 144-152	QA9	QVPSLQYLA	Mamu-A*01
Class I	SIVmac239	Rhesus	Vpx 8-18	II11	IPPGNSGEETI	Mamu-A*01
Class I	SIVmac239	Rhesus	Gag 71-79	GY9	GSENLKSLY	Mamu-A*02
Class I	SIVmac239	Rhesus	Pol 324-332	FF9	FSIPLDEEF	Mamu-A*02
Class I	SIVmac239	Rhesus	Pol 518-526	LY9	LSQEQEGCY	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 296-304	RY9	RTIISLNKY	Mamu-A*02
Class I	SIVmac251	Rhesus	Env 305-312	YR8	YNLTMKCR	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 317-325	KM9	KTVLPVTIM	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 359-367	QY9	QTIVKHPRY	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 519-528	GF10	GTSRNKRGVF	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 760-768	SY9	SSWPWQIEY	Mamu-A*02
Class I	SIVmac239	Rhesus	Env 788-795	RY8	RTLLSRVY	Mamu-A*02
Class I	SIVmac239	Rhesus	Nef 20-28	LY9	LLRARGETY	Mamu-A*02
Class I	SIVmac239	Rhesus	Nef 110-119	TM10	TMSYKLAIDM	Mamu-A*02
Class I	SIVmac239,SIVmac251,SHIV-89.6(P)	Rhesus	Nef 159-167	YY9	YTSGPGIRY	Mamu-A*02
Class I	SIVmac239	Rhesus	Nef 169-177	KL9	KTFGWLWKL	Mamu-A*02
Class I	SIVmac239	Rhesus	Nef 221-229	YY9	YTYEAYVRY	Mamu-A*02
Class I	SIVmac239	Rhesus	Nef 248-256	LM9	LTARGLLNM	Mamu-A*02
Class I	SIVmac239	Rhesus	Vif 89-97	IW9	ITWYSKNFW	Mamu-A*02
Class I	SIVmac239	Rhesus	Vif 97-104	WY8	WTDVTPNY	Mamu-A*02
Class I	SIVmac239	Rhesus	Vif 104-113	YY10	YADILLHSTY	Mamu-A*02
Class I	SIVmac239	Rhesus	Vpr 63-71	RM9	RILQRALFM	Mamu-A*02
Class I	SIVmac239	Rhesus	Pol 782-789	YL8	YHSNVKEL	Mamu-A*07
Class I	SHIV-HXBc2	Rhesus	Env 117-124	KP8	KPCVKLTP	Mamu-A*08
Class I	SIVmac239	Rhesus	Gag 178-186	SI9	SEGCTPYDI	Mamu-A*11
Class I	SIVmac239	Rhesus	Pol 92-100	AL9	AERKQREAL	Mamu-A*11
Class I	SIVmac239	Rhesus	Pol 507-517	AI11	AEAEYEENKII	Mamu-A*11
Class I	SIVmac239,(SIVppm)	Rhesus	Env 495-502	GI8	GDYKLVEI	Mamu-A*11
Class I	SIVmac239	Rhesus	Nef 124-132	KI9	KEKGGLEGI	Mamu-A*11
Class I	SIVmac239	Rhesus	Vpr 13-21	RV9	REPWDEWVV	Mamu-A*11
Class I	SIVppm	Rhesus	Env 573-581	KL9	KRQQELLRL	Mamu-B*03
Class I	SIVppm	Rhesus	Nef 136-146	AL11	ARRHRILDIYL	Mamu-B*03
Class I	SIVppm	Rhesus	Nef 136-146	AL11	ARRHRILDMYL	Mamu-B*03
Class I	SIVppm	Rhesus	Nef 62-70	QP9	QGQYMNTPW	Mamu-B*04
Class I	SIVppm	Rhesus	Nef 62-69	QP8	QGQYMNTP	Mamu-B*04
Class I	SIVmac239	Rhesus	Rev 12-20	KL9	KRLRLIHLL	Mamu-B*08
Class I	SIVmac239	Rhesus	Rev 44-51	RL8	RRRWQQLL	Mamu-B*08
Class I	SIVmac239	Rhesus	Nef 8-16	RL9	RRSRPSGDL	Mamu-B*08
Class I	SIVmac239	Rhesus	Nef 137-146	RL10	RRHRILDIYL	Mamu-B*08
Class I	SIVmac239	Rhesus	Nef 246-254	RL9	RRLTARGLL	Mamu-B*08
Class I	SIVmac239	Rhesus	Vif 123-131	RL9	RRAIRGEQL	Mamu-B*08
Class I	SIVmac239	Rhesus	Vif 172-179	RL8	RRDNRRGL	Mamu-B*08
Class I	SHIV-HXBc2	Rhesus	Env 553-561	NA9	NNLLRAIEA	Mamu-B*12
Class I	SIVmac239	Rhesus	Pol 372-379	MF8	MRHVLEPF	Mamu-B*17
Class I	SIVmac239	Rhesus	Pol 435-443	FW9	FQWMGYELW	Mamu-B*17
Class I	SIVmac239	Rhesus	Pol 604-613	VW10	VWEQWWTDYW	Mamu-B*17
Class I	SIVmac239	Rhesus	Env 241-251	LF11	LRCNDTNYSGF	Mamu-B*17
Class I	SIVmac239	Rhesus	Env 816-825	LY10	LRTELTYLQY	Mamu-B*17
Class I	SIVmac239	Rhesus	Env 830-838	FW9	FHEAVQAVW	Mamu-B*17
Class I	SIVmac239	Rhesus	Nef 165-173	IW9	IRYPKTFGWl	Mamu-B*17
Class I	SIVppm	Rhesus	Nef 165-173	IW9	IRFPKTFGWl	Mamu-B*17
Class I	SIVmac239	Rhesus	Nef 195-203	MW9	MHPAQTSQW	Mamu-B*17
Class I	SIVmac239	Rhesus	Nef 199-207	QW9	QTSQWDDPW	Mamu-B*17
Class I	SIVmac239	Rhesus	Vif 44-52	HW9	HFKVGWAWW	Mamu-B*17
Class I	SIVmac239	Rhesus	Vif 66-73	HW8	HLEVQGYW	Mamu-B*17
Class I	SIVmac239	Rhesus	Vif 135-143	CY9	CRFPRAHKY	Mamu-B*17
Class I	SIVmac239	Burmese-rhesus	Gag 206-216	IL11	IINEEAADWDL	90-120-Ia
Class I	SIVmac239	Burmese-rhesus	Gag 241-249	SW9	SSVDEQIQW	90-120-Ia
Class I	SIVmac239	Burmese-rhesus	Gag 373-380	AA8	APVPIPFA	90-120-Ia
Class I	SIVmac239,SIVmac251,SHIVmn229,SHIV-SF162P3	Pigtail	Gag 164-172	KP9	KKFGAEVVP	Mane-A10,Mane-A16
Class I	SIVmac239,SHIVmn229,SHIV-SF162P3	Pigtail	Gag 251-258	YP8	YRQQNPIP	Mane-A11,Mane-A12
Class I	SIVmac239,SHIVmn229,SHIV-SF162P3	Pigtail	Gag 371-379	AF9	ALAPVPIPF	Mane-A*17
Class I	SIVmac239,SHIVmn229,SHIV-SF162P3	Pigtail	Gag 28-36	KW9	KYMLKHVVW	Mane-B*10
Class I	SIVmac32H-J5	Cynomologus	Gag 242-250	SM9	SVDEQIQWM	Mafa-A*02
Class II	SIVmac239	Rhesus	Gag 102-111	QE10	QIVQRHLVVE	DRBw*606
Class II	SIVmac239	Rhesus	Gag 103-112	IT10	IVQRHLVVET	DRBw*606
Class II	SIVmac239	Rhesus	Gag 184-193	YV10	YDINQMLNCV	DRBw*2104
Class II	SIVmac239	Rhesus	Gag 197-211	GA15	QAAMQIIRDIINEEA	DRB1*0306
Class II	SIVmac239	Rhesus	Gag 260-274	GC15	GNIYRRWIQLGLQKC	DRB*w201
Class II	SHIV-89.6(-HXBc2)	Rhesus	Env 172-191	EY20	EYAFFYKLDIIPIDNDTTSY	DRB*w201
Class II	SHIV-89.6(-HXBc2)	Rhesus	Env 242-261	VL20	VSTVQCTHGIRPVVSTQLLL	DRB1*0406
Class II	SHIV-89.6(-HXBc2)	Rhesus	Env 486-494	YL9	YKVVKIEPL	DRB*w201
Class II	SIVmac239	Rhesus	Rev 11-23	RT13	RKRLRLIHLLHQT	DRB*w201
Class II	SIVmac239	Rhesus	Rev 13-23	RT11	RLRLIHLLHQT	DPB1*06
Class II	SIVmac239	Rhesus	Nef 138-152	RI15	RHRILDIYLEKEEGI	DRBw*606
Class II	SIVmac239	Rhesus	Vpx 31-40	EL10	EINREAVNHL	DRB1*1003
Class II	SIVmac239	Rhesus	Vpx 32-41	IP10	INREAVNHLP	DRB1*1003