T-Helper/CD4+ Epitope Summary

Epitope	Protein	HXB2 Location	Subtype	Species	HLA
`MGARASVLSGGELDRWEK`	p17	1-18	B	human
`ASILRGGKLDKW`	p17	5-16	C	human
`VLSGGELDRWE`	p17	7-17		macaque
`SGGELDRWEKIRLRPGGK`	p17	9-26	B	human
`GGKLDAWEKIRLRPG`	p17	10-24		human
`LDRWEKIRLRP`	p17	13-23		macaque
`EKIRLRPGGKKKYKL`	p17	17-31	B	human
`EKIRLRPGGKKKYKLKHI`	p17	17-34	B	human
`EKIRLRPGGKKKYKLHKI`	p17	17-34	B	human
`RLRPGGKKHYM`	p17	20-30	C	human
`LRPGGKKKYKLKHIV`	p17	21-35		human	DR13.02
`RPGGKKKY?`	p17	22-29	B	human
`HYMLKHLVWAS`	p17	28-38	C	human
`YKLKHIVWASRELER`	p17	29-43	B	human
`KHIVWASRELERFAV`	p17	32-46	B	human
`HIVWASRELERFAVN?`	p17	33-47		human
`HIVWASRELERFAVN`	p17	33-47	B	human
`ASRELERFAVNPGLL`	p17	37-51	B	human	DRB0101, DRB10401, DRB10405, DRB10701, DRB11302, DRB11501
`SRELERFALNPSLLEE`	p17	38-53		human
`RELERFAVN`	p17	39-47	B	human	DRB1*1302
`LERFAVNPGLL`	p17	41-51	B	human	DRB1*1302
`LERFAVNPGLLETSE`	p17	41-55	B	human
`ERFAVNPGLL`	p17	42-51	B	human	DRB30202, DRB30301
`ERFALNPSLLETAEG`	p17	42-56		human
`ERFAVNPGLLETSEGCR`	p17	42-58	B	human	DRB10101, DRB10405, DRB11101, DRB11302
`PGLLETSEGCK`	p17	48-58	C	human
`TGSEELRSLNTVALY`	p17	70-86	B	human
`TSEELKSLFVTVATL`	p17	71-85		human
`EELRSLYNTVA`	p17	73-83		macaque
`LKSLFNTVATLYCVH`	p17	75-89		human
`SLNTVATLYCVHQR`	p17	77-91	B	human
`SLYNTVATLYCVHQRIEV`	p17	77-94	B	human	DRB10101, DRB10401, DRB10405, DRB10701, DRB11302, DRB50101
`VATLYCVHAGI`	p17	82-92	C	human
`EIKDTKEALDKIEEE`	p17	93-107		human
`AAADTGHSSQVSQNY`	p17	118-132		human
`PIVQNIQGQ`	p24	1-9	B	human	DRB1*0101
`PIVQNLQGQMV`	p24	1-11		human	DR1
`PIVQNIQGQMVHQAI`	p24	1-15		human
`QGQMVHQAISPRTLN`	p24	7-21		human, mouse	DR supermotif, I-Ab and HLA-DR
`QMVHQAISPRTLNAWVKV`	p24	9-26	B	human
`VHQAISPRTLNAWVKC`	p24	11-26		human
`NAWVKVVEEKAFSPEC`	p24	21-36		human
`AWVKVIEEKAFSPEV`	p24	22-36		human
`WVKVVEEKAFSPEVIPMF`	p24	23-40	B	human
`WKVVEEKAFSPEVIPMF`	p24	23-40	B	human
`KVVEEKAFSPEVIPM`	p24	25-39		human
`EEKAFSPEV`	p24	28-36	B	human	DRB1*0101
`EEKAFSPEVIP`	p24	28-38	B	human	DQ5
`AFSPEVIPMFT`	p24	31-41	C	human
`AFSPEVIPMFSALSEC`	p24	31-46		human	A*0201
`AFSPEVIPMFSALSEGA`	p24	31-47	B	human
`AFSPEVIPMFSALSEGAT`	p24	31-48	B	human
`PEVIPMFSALSEGATP`	p24	34-49	B	human	DR1
`EVIPMFSALS`	p24	35-44	B	human	DR4, DRB1*0101
`PMFTALSEGAT`	p24	38-48	C	human
`SALSEGATPQDLNTMC`	p24	41-56		human
`TPQDLNTMLNTVGGH`	p24	48-62		human
`PQDLNTMLNTVGGHQ`	p24	49-63	B	human
`PQDLNMMLNIVGGHQA`	p24	49-64		human
`DLNTMLNTYGGHQAAC`	p24	51-66		human
`NTMLNTVGGHQAAM`	p24	53-66	C	human
`ETINEEAAEWDRVHPC`	p24	71-86	B	human
`ETINEEAAEWDRVHPVHA`	p24	71-88	B	human	DRB1*0101
`INEEAAEWDRV`	p24	73-83		macaque
`INEEAAEWDRL`	p24	73-83	C	human
`EAAEWDRVHP`	p24	76-85		human
`EAAEWDRVHPVHAGP`	p24	76-90		human
`EWDRVHPVHA`	p24	79-88	B	human	DRB1*0101
`DRVHPVHAGPIAPGQ`	p24	81-95		macaque
`RLHPVHAGPIA`	p24	82-92	C	human
`PVHGPIAPGQMREP`	p24	85-99		human
`VHAGPIAPG`	p24	86-94	B	human	DQ7
`HAGPIAPGQMREPRG`	p24	87-101		mouse	H-2^b
`PGQMREPRGSDIAGT`	p24	93-107		human
`GQMREPRGSDI`	p24	94-104	C	human
`MREPRGSD`	p24	96-103	B	human
`MREPRGSKIAGTTST`	p24	96-110		human
`EPRGSDIAGT`	p24	98-107	B	human	DQ7
`GSDIAGTTSTLQEQI`	p24	101-115		macaque
`GSDIAGTTSTQEQI`	p24	101-115	B	human
`GSDIAGTTSTLQEQIC`	p24	101-116		human
`GTTSTLQEQIA`	p24	106-116	C	human
`STLQEQIGWMTNNPP`	p24	109-123		human
`EQIAWMTSNPPVPVG`	p24	113-127	C	human
`WMTSNPPVPVG`	p24	117-127	C	human
`TNNPPIPBGEIYKRW`	p24	119-133	B	human	DRB1*1301
`NPPIPVGEIYKRWIIC`	p24	121-136		human
`PVGEIYKRWIILGLN`	p24	125-139	B	human
`GEIYKRWIILGLNKI`	p24	127-141		human	DR supermotif
`EIYKRWIILG`	p24	128-137		human	DRB11301, DRB11302
`IYKRWIILGLNKIVR`	p24	129-143	B	human
`KRWIILGLNKIVRMY`	p24	131-145	B	human, macaque, transgenic mouse	DR supermotif, DR1
`WIILGLNKIVR`	p24	133-143		macaque
`WIILGLNKIVRM`	p24	133-144	B	human	DRB10101, DRB11101, DRB11302, DRB11501, DRB5*0101
`WIILGLNKIVRMYSP`	p24	133-147	B	human
`WIILGLNKIVRMYSPTSI`	p24	133-150	B	human	DRB10101, DRB10401, DRB10405, DRB10701, DRB11101, DRB11302, DRB11501, DRB50101
`ILGLNKIVRMY`	p24	135-145	B	human	DRB10401, DRB11302, DRB1*1501
`GLNKIVRMYSPTSIL`	p24	137-151	B	human
`LNKIVRMYSPVSILD`	p24	138-152		human
`NKIVRMYSPT`	p24	139-148	AG	macaque
`KIVRMYSPT`	p24	140-148	B	human	DRB1*0101
`KIVRMYSPTS`	p24	140-149		human	DR4
`IVRMYSPTSILDIRQC`	p24	141-156		human
`IVRMYSPTSILDIRQGPK`	p24	141-158	B	human
`SPTSILDIRQGPKEP`	p24	146-160		human
`LDIRQGPKEPFRDYVC`	p24	151-166		human
`IRQGPKEPFRDYVDR`	p24	153-167		human
`GPKEPFRDYVDRFYK`	p24	156-170		human
`GPKEPFRDYVDRFYKTLR`	p24	156-173	B	human
`PKEPFRDYV`	p24	157-165	B	human	DQ5
`FRDYVDRFFKT`	p24	161-171	C	human
`DYVDRFYKTLRAE`	p24	163-175		human	DR0101
`DYVDRFYKTLRAEQA`	p24	163-177		human	DRB1*1302
`YVDRFYKTLRAEQASQEV`	p24	164-181	B	human	DRB10101, DRB10401, DRB10405, DRB10701, DRB11101, DRB11302, DRB11501, DRB50101
`VDRFYKTLRAEQASQ`	p24	165-179	B	human
`DRFFKTLRAEQAT`	p24	166-178		human
`DRFFKTLRAEQATQE`	p24	166-180		human
`RFYKTLRAEQAS`	p24	167-178	B	human	DRB10101, DRB10401, DRB10405, DRB10701, DRB11101, DRB11501, DRB5*0101
`FYKTLRAEQASQ`	p24	168-179	B	human	DRB10101, DRB10401, DRB11101, DRB50101
`FYKTLRAEQASQE`	p24	168-180	B	human	DRB10101, DRB10401, DRB10405, DRB11101, DRB11501, DRB50101
`FFKTLRAEQATQE`	p24	168-180		human
`YKTLRAEQA`	p24	169-177	B	human	DRB1*0101
`YKTLRAEQAS`	p24	169-178	AG	macaque
`YKTLRAEQASQ`	p24	169-179		macaque
`YKTLRAEQASQEVKN`	p24	169-183		human
`RAEQASQEVKNWMTE`	p24	173-187	B	human
`VKNWMTETLLVQNANC`	p24	181-198		human
`MTETLLVQNANPDCKTIL`	p24	185-202	B	human
`LLVQNANPDCKTILR`	p24	189-203	C	human
`ILKALGPAATLEEMM`	p24	201-215	B	human
`LGPAATLEEMMTACQ`	p24	205-219	B	human
`TNSATIMMQRGNFRNQRK`	p2p7p1p6	8-25	B	human
`QRGNFRNQRKTVKCF`	p2p7p1p6	16-30	B	human
`NQRKIVKCFNC`	p2p7p1p6	22-32		macaque
`VKCFNCGKGEH`	p2p7p1p6	27-37	C	human
`FNCGKEGHTARNCRA`	p2p7p1p6	30-44		human
`HIAKNCRAPRKKGCWK`	p2p7p1p6	37-52	B	human
`RAPRKKGCWKCGKEGHQM`	p2p7p1p6	43-60	B	human
`KEGHQMKDCTERQAN`	p2p7p1p6	55-69		human
`MKDCTERQANFLGKI`	p2p7p1p6	60-74		human
`DCTERQANFLG`	p2p7p1p6	62-72	C	human
`RQANFLGKIWPSHKGR`	p2p7p1p6	66-81	B	human	DR010401, DRB10101, DRB10405, DRB11101, DRB11302, DRB11501, DRB5*0101
`GKIWPSHKGRPGNFLQSR`	p2p7p1p6	72-89	B	human
`PSYKGRPG`	p2p7p1p6	76-83	B	human
`GNFLQSRPEPTAPPA`	p2p7p1p6	83-97		mouse	H-2^b
`REETTTPS`	p2p7p1p6	89-96	B	human
`ESFRSGVETTTPPQK`	p2p7p1p6	98-112		human
`GEETTTPSQKQEPIDKEL`	p2p7p1p6	103-120	B	human
`FEETTPAPPKQ`	p2p7p1p6	104-113	C	human
`TTTPPQKQEPI`	p2p7p1p6	106-116		macaque
`QKQEPIDKELYPLASLR`	p2p7p1p6	111-127	B	human
`KDREPLTSLKS`	p2p7p1p6	118-128	C	human
`EICTEMEKEGKISKIGP`	RT	36-52		human
`CTEMEKEGKISKIGP`	RT	38-52		mouse	H-2^k
`TEMEKEGKISKIGPE`	RT	39-53		human
`SKIGPENPYNTPVFA`	RT	48-62		mouse	H-2^k
`AIKKKDSTKWRKLVDF`	RT	62-77		mouse	H-2^k
`WEVQLGIPHPAGLKK`	RT	88-102		mouse	H-2^t4
`FRKYTAFTIPSINNE`	RT	124-138		human, mouse	DR supermotif, I-Ab and HLA-DR
`PSINNETPGIRYQYN`	RT	133-147		mouse	H-2ⁱ⁵, H-2^k
`YQYNVLPQGWKGSPA`	RT	144-158		mouse	H-2^t4
`SPAIFQSSMTKILEP`	RT	156-170		human, mouse	DR supermotif, I-Ab and HLA-DR
`IGQHRTKIEELRQHL`	RT	195-209		human
`KDSWTVNDIQKLVGK`	RT	249-263		human, transgenic mouse	DR5, DR5-11.01, HLA-DR
`KDSSTVNDIQKLVGK`	RT	249-263	B	human	DRS
`KDSWTWNDIQKLVGK`	RT	249-263		human
`SSTVNDIQKLV`	RT	251-261		human	DR5(11.01)
`QKLWGKLNWASQIYP`	RT	258-272		human
`WRQLCKLLRGTKALT`	RT	276-290		human
`GTKALTEVIPLTEEA`	RT	285-299		human
`PLTEEAELELAENRE`	RT	294-308		human
`LAENREILKEPVHGV`	RT	303-317		human
`TYQIYQEPFKNLKTG`	RT	338-352	B	human	DP4
`GKTPKFKLPIQKETW`	RT	384-398		human
`WEFVNTPPLVKLWYQ`	RT	414-428		human	DR supermotif, DR(supermotif)
`LEKEPIVGAETFYVD`	RT	429-443		human
`IKKEKVYLAWVPAHK`	RT	526-540	B	mouse	Ad, H-2 D^d
`KEKVYLAWVPAHK`	RT	528-540		mouse	H-2b, H-2d, H-2k
`KEKVYLAWVPAHKG`	RT	528-541	B	mouse	Ad, H-2 D^d
`KEKVYLAWVPAHKGIG`	RT	528-543		mouse	H-2^d, H-2^f, H-2^k
`EKVYLAWVPAHKGIG`	RT	529-543		human, mouse	DR supermotif, I-Ab and HLA-DR
`KVYLAWVPAHKGIGG`	RT	530-544		human	DR supermotif
`SAGIRKVLFLD`	RT-Integrase	553-3	B	human
`HSNWRAMASDFNLPP`	Integrase	16-30		human	DR supermotif
`LKTAVQMAVFIHNFK`	Integrase	172-186	B	human
`KTAVQMAVFFIHNFKR`	Integrase	173-187		human	DR supermotif
`KTAVQMAVFIHNFKR`	Integrase	173-187		human	DR supermotif
`RKGGIGGYSAGERIVDII`	Integrase	187-204	B	human
`SAGERIVDIIATDIQTK`	Integrase	195-211	B	human
`AGERIVDIIATDIQT`	Integrase	196-210	B	human
`QKQITKIQNFRVYYR`	Integrase	214-228		human	DR supermotif
`KQITKIQNFRVYY`	Integrase	215-227	B	human
`LWKGEGAVVIQDNSDIKV`	Integrase	242-259	B	human
`VIQDNSDIKVVPRRKAKI`	Integrase	250-267	B	human
`VITTYWGLHTGE`	Vif	65-76		human
`LGQGVSIEWRKQRYST`	Vif	81-96		human
`QLLFIHFRIGCRHSR`	Vpr	66-80		human, mouse	H-2^d
`QPKTACTNCYCKKCCF`	Tat	17-32	B	human	DR5? plus others
`QPKTACTNCYCKRCCF`	Tat	17-32		human
`HCQVCFITKALGISYG`	Tat	33-48		human	DR5? plus others
`HCQVCFMTKGLGISYG`	Tat	33-48		human
`VCFITKALGISYGRK?`	Tat	36-50	B	mouse	H-2^d
`KGLGISYGRK?`	Tat	41-50	C	mouse
`RRAHQNSQTHQASLS?`	Tat	56-70	B	mouse	H-2^d
`HQASLSKQPTSQPRGD`	Tat	65-80	B	human	DR2? plus others
`DEELIRTVRLIKLLY`	Rev	9-23	B	human
`KTVRLIKFLYQSNPPPS`	Rev	14-30	B	human
`SNPPPNPEGTRQARR`	Rev	25-39	B	human
`GTRQARRNRRRRWRER`	Rev	33-48	B	human
`RRRRWRERQRQIHSIS`	Rev	41-56	B	human
`AIVVWSIVLIEYRKIL`	Vpu	19-34		human
`TEKLWVTVYYGVPVW`	gp160	31-45	B	human	DP4
`EQLWVTVYYGVPV`	gp160	32-44		mouse	H-2^bxk
`VYYGVPVWKEA`	gp160	38-48		chimpanzee, human, macaque, mouse	H-2^bxk, H-2^sxd
`GVPVWKEATTLFC`	gp160	41-54		macaque, mouse	H-2^sxd
`AHKVWATHACV`	gp160	65-75		mouse	H-2^bxk, H-2^sxd
`CVPTNPVPQEVV`	gp160	74-85		mouse	H-2^bxk, H-2^sxd
`CVPTDPNPQEVV`	gp160	74-85	B	human
`YFNMWKNNMV`	gp160	92-101		human
`EQMHEDIISLWDQ`	gp160	102-114		mouse	H-2^bxk
`EQMHEDIISLWDQSL`	gp160	102-116		mouse	H-2^b, H-2^d, H-2ⁱ⁵
`HEDIISLWDQSLK`	gp160	105-117	B, C	human, macaque, mouse	H-2^k
`IISLWDQSLKPC`	gp160	108-119	B	human
`SLWDQSLKPCVKLTPL`	gp160	110-125		human
`LWDQSLKPCVKLT`	gp160	111-123		macaque
`SLKPCVKLTPLC`	gp160	115-126	B	human
`SLKPCVKLTPLCVSL`	gp160	115-129	B	human	HLA-DR
`KNCSFNITTELIDKK`	gp160	155-169		mouse	H-2 IA^b
`KNCSFNISTSIRGKV`	gp160	155-169	B	human	HLA-DR
`LFYKLDVVQIDNSTN`	gp160	175-189		mouse	H-2 IA^b
`TSVITQACPKVSFEP`	gp160	198-212		mouse	H-2 IA^b
`TSVITQACPKVSFEPIPI`	gp160	198-215		mouse	H-2 IA^b
`SVITQACSKVSFE`	gp160	199-211		chimpanzee, human, macaque, mouse	H-2^bxk, H-2^sxd
`VITQACPKVSFEPIP`	gp160	200-214	B	human	HLA-DR
`ITQACPKVSFEP`	gp160	201-212		mouse	H-2 IA^b
`PKVSFEPIPIHYCAP`	gp160	206-220	B, D	mouse	H-2 IA^b, H2b
`ITFEPIPIHYC`	gp160	208-218		mouse	H-2 IA^b
`ITFEPIPIHYCAPAG`	gp160	208-222		mouse	H-2 IA^b
`SFEPIPIHYCAP`	gp160	209-220	B	human	DR
`FEPIPIHYC`	gp160	210-218	B	mouse	Class II I Ab
`FEPIPIHYCAFPGF`	gp160	210-223		mouse	H-2^bxk
`PIHYCAP`	gp160	214-220		mouse	H-2 IA^b
`IHYCAPAGFAI`	gp160	215-225		mouse	H-2 IA^b
`HYCAPAGFAI`	gp160	216-225		mouse	H-2 IA^b
`PAGFAILKCNNKTFN`	gp160	220-234		human
`PAGFAILKCNNKTFNY`	gp160	220-235	B	human	DR2
`FAILKCNNK`	gp160	223-231	B	human, mouse	DR2, DR6, H-2^d
`NKTFNGKGPCTNVSTY`	gp160	230-245		human
`GTGPCTNVSTVQC`	gp160	235-247		macaque
`TNVSTVQCTHGRPIY`	gp160	240-255		human
`GIRPIVSTQLLLNGSC`	gp160	250-265		human
`EVVIRSANFTDNAKT`	gp160	269-283		human
`VVIRSDNFTNNAKTIC`	gp160	270-285		human
`SANFTDNAKTIIVQL`	gp160	274-288		human
`NAKTIIVQLNESVAIC`	gp160	280-296		human
`NESVAINCT`	gp160	289-297		human
`SVVEINCTRPNNNTRKS`	gp160	290-306	B	human
`CTRPNNNTRKSI`	gp160	296-307
`RPYNNTRKGI`	gp160	298-307		mouse	H-2 IA^b
`NTRKSIRIQRGPGR`	gp160	302-315		mouse
`(CKR)KIHIGPGQAFYT`	gp160	308-319	C	mouse	H-2^b, H-2^d, H-2^k, H-2^s
`RIHIGPGRAFYTTK`	gp160	308-321		mouse	H-2^d
`RIQRGPGRAFVTIGK`	gp160	308-322	B, C	human, macaque, mouse	DR, H-2 A^d, H-2 I-A^d
`RIQRGPRAFVTIGK`	gp160	308-322		mouse	H-2^d
`RIHIGPGRAFYTTKN`	gp160	308-322	B, C	human
`EQRGPGRAFVTIGKI`	gp160	309-323		human
`IQRGPGRAFVTIGKIGN`	gp160	309-325		human
`RGPGRAFVT`	gp160	311-319	B	mouse
`RGPGPAFVTI`	gp160	311-320		mouse	H-2^d
`RGPGRAFVTIGK`	gp160	311-322		mouse	H-2^d
`GRAFVTIGKIGNMRQ`	gp160	314-328		human
`RAYYTTNIVGNIRQ`	gp160	315-328		mouse	H-2 IA^b
`FVTIGKIGNMRQAHC`	gp160	317-331		mouse	H-2^d, H-2^k
`RIIGDIRKAHCNISRY`	gp160	321-336		human
`IIGDIRQAHCNISRE`	gp160	322-336		mouse	H-2 IA^b
`IVGNIRQAHCNVSKA`	gp160	322-336		mouse	H-2 IA^b
`GNIRQAHCNVSKA`	gp160	324-336		mouse	H-2 IA^b
`GNIRQAHCNVSKAKW`	gp160	324-338	B, D	mouse	H-2 IA^b, H2b
`RQAHCNISRAKWNNT`	gp160	327-341	B	mouse	I-A^d
`CNISRAQWNNTLEQI`	gp160	331-345		human
`RAKWNNTLKQIDSKL`	gp160	335-349		mouse	H-2^b, H-2^k, H-2^s
`RAKWNNTLKQICSKL`	gp160	335-349		mouse	H-2ⁱ⁵, H-2^k, H-2^t4
`TLEQIVKKLREQFGNC`	gp160	341-356		human
`QIVKKLREQFGNNK`	gp160	344-357		human
`FGNNKTII`	gp160	353-360		macaque
`QSSGGDPEIV`	gp160	363-372	B	human
`SSGGKPEIVTHSFNC`	gp160	364-378		human
`PEIVTHSFNCGGEFF`	gp160	369-383		human
`GEFFYCNSTQLFNS?`	gp160	380-393	B	human
`EFFYCNTTQLFNNTW`	gp160	381-395		human
`TQLFNSTWFNSTWST`	gp160	388-402	B	human	DP4
`FNNTWRLNHTEGTKGC`	gp160	391-405		human
`TWFNSTWSTKGSNNT`	gp160	394-408		human
`TWSTKGSNNTEGSDT`	gp160	399-413		human
`SNNTVGNPIILPCRI`	gp160	405-420	B	mouse	H-2 IA^b, H2b
`LPCRIKQIINMWQEVY`	gp160	416-431		human
`KQIINMWQEVGKAMYA`	gp160	421-436	B, C	chimpanzee, goat, human, mouse	DR, DRB1*13, Ek, H-2^d, H-2^k, H-2^s, H-2^t4, H-2Eα Eβ ^k
`KQFINMWQEWGKAMYA`	gp160	421-436		human
`FINMWQEVGKAMYAPPIS`	gp160	423-440		human
`INMWQEVGKAMYAPP`	gp160	424-438		human
`NMWQEVGKAMYAPPI`	gp160	425-439		mouse	H-2^s, H-2^t4
`MWQEVGKAMYAPPIGC`	gp160	426-441		human
`VGKAMYAPPISGQIR`	gp160	430-444		mouse	H-2^b, H-2^d, H-2^d H-2ⁱ⁵, H-2^k, H-2^s, H-2^t4
`AMYAPPIAGLIQCSS`	gp160	433-447	D	mouse	H-2 IA^b, H2b
`APPIGGQISCSSNITY`	gp160	436-451		human
`IGGQIRCSSN`	gp160	439-448		human
`SSNITGLLLTRDGGTC`	gp160	446-461		human
`RDGGTNVTNDTEVFRC`	gp160	456-470		human
`GNSNNESEIFRPGGG`	gp160	459-473		human
`FRPGGGDMRDNWRSEL`	gp160	468-483		human
`DMRDNWRSELYKYKV`	gp160	474-488		human
`RDNWRSELYKYKVVK`	gp160	476-490		mouse	H-2^d, H-2^k, H-2^s, H-2^t4
`YKYKVVKIEPLGV`	gp160	484-496	B	macaque	DR*W201
`YKYKVVKIEPLGVAP`	gp160	484-498		human
`CKYKVVKIEPLGVAPT`	gp160	484-499		mouse	H-2^d, H-2ⁱ⁵, H-2^k, H-2^t4
`KYKVVKIEPLGVAPT`	gp160	485-499		mouse	H-2^b, H-2^d, H-2^k, H-2^s
`KYKVIKIEPLGIAPTC`	gp160	485-500		human
`YKVVKIEPL`	gp160	486-494		macaque	DRB*W201
`TKAKRRVVEREKR`	gp160	499-511		human	DR
`GIVQQQNNLLRAIEA`	gp160	547-561		human
`QQHLLQLTVWGIKQL`	gp160	562-576		human
`LQARILAVERYLKDQQ`	gp160	576-591		mouse	H-2^b, H-2^d
`YLRDQQLLGIWG`	gp160	586-597		chimpanzee, human
`YLRDQQLLGIWGC`	gp160	586-598		macaque, mouse
`LGLWGCSGKLIC`	gp160	593-604		mouse	H2^d
`LGIWGCSGKLIC`	gp160	593-604		human
`GIWGCSGKLI`	gp160	594-603		human
`GIWGCSGKLIC`	gp160	594-604		human
`CSGKLICTTAVP`	gp160	598-609	B	human
`CTTAVPWNASWS`	gp160	604-615	B	human
`TNVPWNASWSNKSLE`	gp160	606-620	B	mouse	Class II I Ab, H-2 IA^b
`PWNASWSN`	gp160	609-616		human
`NASWSNKSLE`	gp160	611-620		mouse	H-2 IA^b
`WSNKSLEDIWDNMTWC`	gp160	614-629		human
`EQIWNHTTWMEWDRE`	gp160	620-634	B	human	DP4
`EIDNYTNTIYTLLEEC`	gp160	634-649		human
`EESQNQQEKNEQELL`	gp160	647-661		human
`QNQQEKNEQELLE`	gp160	650-662	B	human
`ASLWNWFNITNWLWY`	gp160	667-681		human
`IKLFIMIVGGLVGLR`	gp160	682-696		human
`GIEEEGGERDRDR`	gp160	732-744	B	human
`RIVELLGRRGWEALK`	gp160	780-794		mouse	H-2^d, H-2^k, H-2^s, H-2^t4
`KYWWNLLQYWSQELK`	gp160	794-808		mouse	H-2^d, H-2^k, H-2^s
`LLQYWSQELKNSAVS`	gp160	799-813		mouse	H-2^d, H-2^k, H-2^s, H-2^t4
`WLNATAIAVTEGTDRC`	gp160	814-829		human
`AVAEGTDRVIEVVQG`	gp160	821-835		mouse	H-2^b, H-2^k, H-2^s
`YVAEGTDRVIEVVQGACR`	gp160	821-838		human
`DRVIEVVQG`	gp160	827-835		mouse	H-2^k
`DRVIEVVQGAYRAIR`	gp160	827-841	B	human, macaque, mouse	H-2^b, H-2ⁱ⁵, H-2^k
`DRVIEVVGQAYRAIR`	gp160	827-841	C	human
`VIEVVQGAYRAIRHI`	gp160	829-843		mouse	H-2^b, H-2^k
`QGAYRAIR`	gp160	834-841		mouse	H-2ⁱ⁵
`QGAYRAIRHIPRRIR`	gp160	834-848		mouse	H-2^b, H-2^d, H-2ⁱ⁵, H-2^k, H-2^s, H-2^t4
`AIRHIPRRIR`	gp160	839-848		mouse	H-2^d, H-2^t4
`AIRHIPRRIRQGLER`	gp160	839-853		human, mouse	H-2^b, H-2^d, H-2^k, H-2^s, H-2^t4
`HIPRRIRQGLERILL`	gp160	842-856		human
`RSVVGWPAVRERMRRA`	Nef	8-23	B	human
`SAIRERMRR`	Nef	14-22	B	human	DRw6
`PAVRERMRRAEPAADGV`	Nef	14-30	B	human
`RRAEPAADGVGAVSRDL`	Nef	21-37	B	human
`LEKHGAITSSNTAAT`	Nef	37-51		human
`ITSSNTA`	Nef	43-49	B	human	DQw7
`SSNTAATNAACAWLE`	Nef	45-59		human
`AWLEAQEEEEVGF`	Nef	56-68		human, mouse, transgenic mouse	DQ, DQ2, DQ3, DQ5, DQ6, DQ7, DQ8
`EEVGFPVRPQ`	Nef	64-73	B	human	DRw15(2)
`EVGFPVIPQVPLRPM`	Nef	65-79		human
`VGFPVRPQ`	Nef	66-73	B	human	DR1, DRw15(2)
`QVPLRPMTYKAAVDLSHF`	Nef	73-90	B	human
`YKAAVDLSHFLKEKGGL`	Nef	81-97	B	human
`EGLIHSQRRQDILDL`	Nef	98-112		chimpanzee
`QKRQDILDLWVYHTQGYF`	Nef	104-121	B	human
`LWVYHTQGYFPDWQNY`	Nef	112-127	B	human
`LWVYHTGQGYFPDWQNYT`	Nef	112-128	B	human
`NSLLHPMSLHGMDDPEK`	Nef	162-178	B	human
`PEKEVLVWKFDSRLAFHH`	Nef	176-193	B	human	DRB10101, DRB10401, DRB10701, DRB11101, DRB11302, DRB11501, DRB5*0101
`LVWRFDSK`	Nef	181-188	B	human	DP5
`KFDSRLAFHHMARELH`	Nef	184-199	B	human	DRB10101, DRB10701, DRB11101, DRB11501, DRB5*0101
`FDSRLAFHHVARELHP`	Nef	185-200		human
`LAFHHVARELHPEYF`	Nef	189-203		human
`AFHHMARELHPEYYKDC`	Nef	190-206	B	human
`FHHMARELH`	Nef	191-199	B	human	DR1

Epitope

Protein

HXB2 Location

Subtype

Species

HLA

MGARASVLSGGELDRWEK

p17

1-18

B

human

ASILRGGKLDKW

p17

5-16

C

human

VLSGGELDRWE

p17

7-17

macaque

SGGELDRWEKIRLRPGGK

p17

9-26

B

human

GGKLDAWEKIRLRPG

p17

10-24

human

LDRWEKIRLRP

p17

13-23

macaque

EKIRLRPGGKKKYKL

p17

17-31

B

human

EKIRLRPGGKKKYKLKHI

p17

17-34

B

human

EKIRLRPGGKKKYKLHKI

p17

17-34

B

human

RLRPGGKKHYM

p17

20-30

C

human

LRPGGKKKYKLKHIV

p17

21-35

human

DR13.02

RPGGKKKY?

p17

22-29

B

human

HYMLKHLVWAS

p17

28-38

C

human

YKLKHIVWASRELER

p17

29-43

B

human

KHIVWASRELERFAV

p17

32-46

B

human

HIVWASRELERFAVN?

p17

33-47

human

HIVWASRELERFAVN

p17

33-47

B

human

ASRELERFAVNPGLL

p17

37-51

B

human

DRB*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1302, DRB1*1501

SRELERFALNPSLLEE

p17

38-53

human

RELERFAVN

p17

39-47

B

human

DRB1*1302

LERFAVNPGLL

p17

41-51

B

human

DRB1*1302

LERFAVNPGLLETSE

p17

41-55

B

human

ERFAVNPGLL

p17

42-51

B

human

DRB3*0202, DRB3*0301

ERFALNPSLLETAEG

p17

42-56

human

ERFAVNPGLLETSEGCR

p17

42-58

B

human

DRB1*0101, DRB1*0405, DRB1*1101, DRB1*1302

PGLLETSEGCK

p17

48-58

C

human

TGSEELRSLNTVALY

p17

70-86

B

human

TSEELKSLFVTVATL

p17

71-85

human

EELRSLYNTVA

p17

73-83

macaque

LKSLFNTVATLYCVH

p17

75-89

human

SLNTVATLYCVHQR

p17

77-91

B

human

SLYNTVATLYCVHQRIEV

p17

77-94

B

human

DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1302, DRB5*0101

VATLYCVHAGI

p17

82-92

C

human

EIKDTKEALDKIEEE

p17

93-107

human

AAADTGHSSQVSQNY

p17

118-132

human

PIVQNIQGQ

p24

1-9

B

human

DRB1*0101

PIVQNLQGQMV

p24

1-11

human

DR1

PIVQNIQGQMVHQAI

p24

1-15

human

QGQMVHQAISPRTLN

p24

7-21

human, mouse

DR supermotif, I-Ab and HLA-DR

QMVHQAISPRTLNAWVKV

p24

9-26

B

human

VHQAISPRTLNAWVKC

p24

11-26

human

NAWVKVVEEKAFSPEC

p24

21-36

human

AWVKVIEEKAFSPEV

p24

22-36

human

WVKVVEEKAFSPEVIPMF

p24

23-40

B

human

WKVVEEKAFSPEVIPMF

p24

23-40

B

human

KVVEEKAFSPEVIPM

p24

25-39

human

EEKAFSPEV

p24

28-36

B

human

DRB1*0101

EEKAFSPEVIP

p24

28-38

B

human

DQ5

AFSPEVIPMFT

p24

31-41

C

human

AFSPEVIPMFSALSEC

p24

31-46

human

A*0201

AFSPEVIPMFSALSEGA

p24

31-47

B

human

AFSPEVIPMFSALSEGAT

p24

31-48

B

human

PEVIPMFSALSEGATP

p24

34-49

B

human

DR1

EVIPMFSALS

p24

35-44

B

human

DR4, DRB1*0101

PMFTALSEGAT

p24

38-48

C

human

SALSEGATPQDLNTMC

p24

41-56

human

TPQDLNTMLNTVGGH

p24

48-62

human

PQDLNTMLNTVGGHQ

p24

49-63

B

human

PQDLNMMLNIVGGHQA

p24

49-64

human

DLNTMLNTYGGHQAAC

p24

51-66

human

NTMLNTVGGHQAAM

p24

53-66

C

human

ETINEEAAEWDRVHPC

p24

71-86

B

human

ETINEEAAEWDRVHPVHA

p24

71-88

B

human

DRB1*0101

INEEAAEWDRV

p24

73-83

macaque

INEEAAEWDRL

p24

73-83

C

human

EAAEWDRVHP

p24

76-85

human

EAAEWDRVHPVHAGP

p24

76-90

human

EWDRVHPVHA

p24

79-88

B

human

DRB1*0101

DRVHPVHAGPIAPGQ

p24

81-95

macaque

RLHPVHAGPIA

p24

82-92

C

human

PVHGPIAPGQMREP

p24

85-99

human

VHAGPIAPG

p24

86-94

B

human

DQ7

HAGPIAPGQMREPRG

p24

87-101

mouse

H-2^b

PGQMREPRGSDIAGT

p24

93-107

human

GQMREPRGSDI

p24

94-104

C

human

MREPRGSD

p24

96-103

B

human

MREPRGSKIAGTTST

p24

96-110

human

EPRGSDIAGT

p24

98-107

B

human

DQ7

GSDIAGTTSTLQEQI

p24

101-115

macaque

GSDIAGTTSTQEQI

p24

101-115

B

human

GSDIAGTTSTLQEQIC

p24

101-116

human

GTTSTLQEQIA

p24

106-116

C

human

STLQEQIGWMTNNPP

p24

109-123

human

EQIAWMTSNPPVPVG

p24

113-127

C

human

WMTSNPPVPVG

p24

117-127

C

human

TNNPPIPBGEIYKRW

p24

119-133

B

human

DRB1*1301

NPPIPVGEIYKRWIIC

p24

121-136

human

PVGEIYKRWIILGLN

p24

125-139

B

human

GEIYKRWIILGLNKI

p24

127-141

human

DR supermotif

EIYKRWIILG

p24

128-137

human

DRB1*1301, DRB1*1302

IYKRWIILGLNKIVR

p24

129-143

B

human

KRWIILGLNKIVRMY

p24

131-145

B

human, macaque, transgenic mouse

DR supermotif, DR1

WIILGLNKIVR

p24

133-143

macaque

WIILGLNKIVRM

p24

133-144

B

human

DRB1*0101, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101

WIILGLNKIVRMYSP

p24

133-147

B

human

WIILGLNKIVRMYSPTSI

p24

133-150

B

human

DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101

ILGLNKIVRMY

p24

135-145

B

human

DRB1*0401, DRB1*1302, DRB1*1501

GLNKIVRMYSPTSIL

p24

137-151

B

human

LNKIVRMYSPVSILD

p24

138-152

human

NKIVRMYSPT

p24

139-148

AG

macaque

KIVRMYSPT

p24

140-148

B

human

DRB1*0101

KIVRMYSPTS

p24

140-149

human

DR4

IVRMYSPTSILDIRQC

p24

141-156

human

IVRMYSPTSILDIRQGPK

p24

141-158

B

human

SPTSILDIRQGPKEP

p24

146-160

human

LDIRQGPKEPFRDYVC

p24

151-166

human

IRQGPKEPFRDYVDR

p24

153-167

human

GPKEPFRDYVDRFYK

p24

156-170

human

GPKEPFRDYVDRFYKTLR

p24

156-173

B

human

PKEPFRDYV

p24

157-165

B

human

DQ5

FRDYVDRFFKT

p24

161-171

C

human

DYVDRFYKTLRAE

p24

163-175

human

DR0101

DYVDRFYKTLRAEQA

p24

163-177

human

DRB1*1302

YVDRFYKTLRAEQASQEV

p24

164-181

B

human

DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101

VDRFYKTLRAEQASQ

p24

165-179

B

human

DRFFKTLRAEQAT

p24

166-178

human

DRFFKTLRAEQATQE

p24

166-180

human

RFYKTLRAEQAS

p24

167-178

B

human

DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1501, DRB5*0101

FYKTLRAEQASQ

p24

168-179

B

human

DRB1*0101, DRB1*0401, DRB1*1101, DRB5*0101

FYKTLRAEQASQE

p24

168-180

B

human

DRB1*0101, DRB1*0401, DRB1*0405, DRB1*1101, DRB1*1501, DRB5*0101

FFKTLRAEQATQE

p24

168-180

human

YKTLRAEQA

p24

169-177

B

human

DRB1*0101

YKTLRAEQAS

p24

169-178

AG

macaque

YKTLRAEQASQ

p24

169-179

macaque

YKTLRAEQASQEVKN

p24

169-183

human

RAEQASQEVKNWMTE

p24

173-187

B

human

VKNWMTETLLVQNANC

p24

181-198

human

MTETLLVQNANPDCKTIL

p24

185-202

B

human

LLVQNANPDCKTILR

p24

189-203

C

human

ILKALGPAATLEEMM

p24

201-215

B

human

LGPAATLEEMMTACQ

p24

205-219

B

human

TNSATIMMQRGNFRNQRK

p2p7p1p6

8-25

B

human

QRGNFRNQRKTVKCF

p2p7p1p6

16-30

B

human

NQRKIVKCFNC

p2p7p1p6

22-32

macaque

VKCFNCGKGEH

p2p7p1p6

27-37

C

human

FNCGKEGHTARNCRA

p2p7p1p6

30-44

human

HIAKNCRAPRKKGCWK

p2p7p1p6

37-52

B

human

RAPRKKGCWKCGKEGHQM

p2p7p1p6

43-60

B

human

KEGHQMKDCTERQAN

p2p7p1p6

55-69

human

MKDCTERQANFLGKI

p2p7p1p6

60-74

human

DCTERQANFLG

p2p7p1p6

62-72

C

human

RQANFLGKIWPSHKGR

p2p7p1p6

66-81

B

human

DR01*0401, DRB1*0101, DRB1*0405, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101

GKIWPSHKGRPGNFLQSR

p2p7p1p6

72-89

B

human

PSYKGRPG

p2p7p1p6

76-83

B

human

GNFLQSRPEPTAPPA

p2p7p1p6

83-97

mouse

H-2^b

REETTTPS

p2p7p1p6

89-96

B

human

ESFRSGVETTTPPQK

p2p7p1p6

98-112

human

GEETTTPSQKQEPIDKEL

p2p7p1p6

103-120

B

human

FEETTPAPPKQ

p2p7p1p6

104-113

C

human

TTTPPQKQEPI

p2p7p1p6

106-116

macaque

QKQEPIDKELYPLASLR

p2p7p1p6

111-127

B

human

KDREPLTSLKS

p2p7p1p6

118-128

C

human

EICTEMEKEGKISKIGP

RT

36-52

human

CTEMEKEGKISKIGP

RT

38-52

mouse

H-2^k

TEMEKEGKISKIGPE

RT

39-53

human

SKIGPENPYNTPVFA

RT

48-62

mouse

H-2^k

AIKKKDSTKWRKLVDF

RT

62-77

mouse

H-2^k

WEVQLGIPHPAGLKK

RT

88-102

mouse

H-2^t4

FRKYTAFTIPSINNE

RT

124-138

human, mouse

DR supermotif, I-Ab and HLA-DR

PSINNETPGIRYQYN

RT

133-147

mouse

H-2ⁱ⁵, H-2^k

YQYNVLPQGWKGSPA

RT

144-158

mouse

H-2^t4

SPAIFQSSMTKILEP

RT

156-170

human, mouse

DR supermotif, I-Ab and HLA-DR

IGQHRTKIEELRQHL

RT

195-209

human

KDSWTVNDIQKLVGK

RT

249-263

human, transgenic mouse

DR5, DR5-11.01, HLA-DR

KDSSTVNDIQKLVGK

RT

249-263

B

human

DRS

KDSWTWNDIQKLVGK

RT

249-263

human

SSTVNDIQKLV

RT

251-261

human

DR5(11.01)

QKLWGKLNWASQIYP

RT

258-272

human

WRQLCKLLRGTKALT

RT

276-290

human

GTKALTEVIPLTEEA

RT

285-299

human

PLTEEAELELAENRE

RT

294-308

human

LAENREILKEPVHGV

RT

303-317

human

TYQIYQEPFKNLKTG

RT

338-352

B

human

DP4

GKTPKFKLPIQKETW

RT

384-398

human

WEFVNTPPLVKLWYQ

RT

414-428

human

DR supermotif, DR(supermotif)

LEKEPIVGAETFYVD

RT

429-443

human

IKKEKVYLAWVPAHK

RT

526-540

B

mouse

Ad, H-2 D^d

KEKVYLAWVPAHK

RT

528-540

mouse

H-2b, H-2d, H-2k

KEKVYLAWVPAHKG

RT

528-541

B

mouse

Ad, H-2 D^d

KEKVYLAWVPAHKGIG

RT

528-543

mouse

H-2^d, H-2^f, H-2^k

EKVYLAWVPAHKGIG

RT

529-543

human, mouse

DR supermotif, I-Ab and HLA-DR

KVYLAWVPAHKGIGG

RT

530-544

human

DR supermotif

SAGIRKVLFLD

RT-Integrase

553-3

B

human

HSNWRAMASDFNLPP

Integrase

16-30

human

DR supermotif

LKTAVQMAVFIHNFK

Integrase

172-186

B

human

KTAVQMAVFFIHNFKR

Integrase

173-187

human

DR supermotif

KTAVQMAVFIHNFKR

Integrase

173-187

human

DR supermotif

RKGGIGGYSAGERIVDII

Integrase

187-204

B

human

SAGERIVDIIATDIQTK

Integrase

195-211

B

human

AGERIVDIIATDIQT

Integrase

196-210

B

human

QKQITKIQNFRVYYR

Integrase

214-228

human

DR supermotif

KQITKIQNFRVYY

Integrase

215-227

B

human

LWKGEGAVVIQDNSDIKV

Integrase

242-259

B

human

VIQDNSDIKVVPRRKAKI

Integrase

250-267

B

human

VITTYWGLHTGE

Vif

65-76

human

LGQGVSIEWRKQRYST

Vif

81-96

human

QLLFIHFRIGCRHSR

Vpr

66-80

human, mouse

H-2^d

QPKTACTNCYCKKCCF

Tat

17-32

B

human

DR5? plus others

QPKTACTNCYCKRCCF

Tat

17-32

human

HCQVCFITKALGISYG

Tat

33-48

human

DR5? plus others

HCQVCFMTKGLGISYG

Tat

33-48

human

VCFITKALGISYGRK?

Tat

36-50

B

mouse

H-2^d

KGLGISYGRK?

Tat

41-50

C

mouse

RRAHQNSQTHQASLS?

Tat

56-70

B

mouse

H-2^d

HQASLSKQPTSQPRGD

Tat

65-80

B

human

DR2? plus others

DEELIRTVRLIKLLY

Rev

9-23

B

human

KTVRLIKFLYQSNPPPS

Rev

14-30

B

human

SNPPPNPEGTRQARR

Rev

25-39

B

human

GTRQARRNRRRRWRER

Rev

33-48

B

human

RRRRWRERQRQIHSIS

Rev

41-56

B

human

AIVVWSIVLIEYRKIL

Vpu

19-34

human

TEKLWVTVYYGVPVW

gp160

31-45

B

human

DP4

EQLWVTVYYGVPV

gp160

32-44

mouse

H-2^bxk

VYYGVPVWKEA

gp160

38-48

chimpanzee, human, macaque, mouse

H-2^bxk, H-2^sxd

GVPVWKEATTLFC

gp160

41-54

macaque, mouse

H-2^sxd

AHKVWATHACV

gp160

65-75

mouse

H-2^bxk, H-2^sxd

CVPTNPVPQEVV

gp160

74-85

mouse

H-2^bxk, H-2^sxd

CVPTDPNPQEVV

gp160

74-85

B

human

YFNMWKNNMV

gp160

92-101

human

EQMHEDIISLWDQ

gp160

102-114

mouse

H-2^bxk

EQMHEDIISLWDQSL

gp160

102-116

mouse

H-2^b, H-2^d, H-2ⁱ⁵

HEDIISLWDQSLK

gp160

105-117

B, C

human, macaque, mouse

H-2^k

IISLWDQSLKPC

gp160

108-119

B

human

SLWDQSLKPCVKLTPL

gp160

110-125

human

LWDQSLKPCVKLT

gp160

111-123

macaque

SLKPCVKLTPLC

gp160

115-126

B

human

SLKPCVKLTPLCVSL

gp160

115-129

B

human

HLA-DR

KNCSFNITTELIDKK

gp160

155-169

mouse

H-2 IA^b

KNCSFNISTSIRGKV

gp160

155-169

B

human

HLA-DR

LFYKLDVVQIDNSTN

gp160

175-189

mouse

H-2 IA^b

TSVITQACPKVSFEP

gp160

198-212

mouse

H-2 IA^b

TSVITQACPKVSFEPIPI

gp160

198-215

mouse

H-2 IA^b

SVITQACSKVSFE

gp160

199-211

chimpanzee, human, macaque, mouse

H-2^bxk, H-2^sxd

VITQACPKVSFEPIP

gp160

200-214

B

human

HLA-DR

ITQACPKVSFEP

gp160

201-212

mouse

H-2 IA^b

PKVSFEPIPIHYCAP

gp160

206-220

B, D

mouse

H-2 IA^b, H2b

ITFEPIPIHYC

gp160

208-218

mouse

H-2 IA^b

ITFEPIPIHYCAPAG

gp160

208-222

mouse

H-2 IA^b

SFEPIPIHYCAP

gp160

209-220

B

human

DR

FEPIPIHYC

gp160

210-218

B

mouse

Class II I Ab

FEPIPIHYCAFPGF

gp160

210-223

mouse

H-2^bxk

PIHYCAP

gp160

214-220

mouse

H-2 IA^b

IHYCAPAGFAI

gp160

215-225

mouse

H-2 IA^b

HYCAPAGFAI

gp160

216-225

mouse

H-2 IA^b

PAGFAILKCNNKTFN

gp160

220-234

human

PAGFAILKCNNKTFNY

gp160

220-235

B

human

DR2

FAILKCNNK

gp160

223-231

B

human, mouse

DR2, DR6, H-2^d

NKTFNGKGPCTNVSTY

gp160

230-245

human

GTGPCTNVSTVQC

gp160

235-247

macaque

TNVSTVQCTHGRPIY

gp160

240-255

human

GIRPIVSTQLLLNGSC

gp160

250-265

human

EVVIRSANFTDNAKT

gp160

269-283

human

VVIRSDNFTNNAKTIC

gp160

270-285

human

SANFTDNAKTIIVQL

gp160

274-288

human

NAKTIIVQLNESVAIC

gp160

280-296

human

NESVAINCT

gp160

289-297

human

SVVEINCTRPNNNTRKS

gp160

290-306

B

human

CTRPNNNTRKSI

gp160

296-307

RPYNNTRKGI

gp160

298-307

mouse

H-2 IA^b

NTRKSIRIQRGPGR

gp160

302-315

mouse

(CKR)KIHIGPGQAFYT

gp160

308-319

C

mouse

H-2^b, H-2^d, H-2^k, H-2^s

RIHIGPGRAFYTTK

gp160

308-321

mouse

H-2^d

RIQRGPGRAFVTIGK

gp160

308-322

B, C

human, macaque, mouse

DR, H-2 A^d, H-2 I-A^d

RIQRGPRAFVTIGK

gp160

308-322

mouse

H-2^d

RIHIGPGRAFYTTKN

gp160

308-322

B, C

human

EQRGPGRAFVTIGKI

gp160

309-323

human

IQRGPGRAFVTIGKIGN

gp160

309-325

human

RGPGRAFVT

gp160

311-319

B

mouse

RGPGPAFVTI

gp160

311-320

mouse

H-2^d

RGPGRAFVTIGK

gp160

311-322

mouse

H-2^d

GRAFVTIGKIGNMRQ

gp160

314-328

human

RAYYTTNIVGNIRQ

gp160

315-328

mouse

H-2 IA^b

FVTIGKIGNMRQAHC

gp160

317-331

mouse

H-2^d, H-2^k

RIIGDIRKAHCNISRY

gp160

321-336

human

IIGDIRQAHCNISRE

gp160

322-336

mouse

H-2 IA^b

IVGNIRQAHCNVSKA

gp160

322-336

mouse

H-2 IA^b

GNIRQAHCNVSKA

gp160

324-336

mouse

H-2 IA^b

GNIRQAHCNVSKAKW

gp160

324-338

B, D

mouse

H-2 IA^b, H2b

RQAHCNISRAKWNNT

gp160

327-341

B

mouse

I-A^d

CNISRAQWNNTLEQI

gp160

331-345

human

RAKWNNTLKQIDSKL

gp160

335-349

mouse

H-2^b, H-2^k, H-2^s

RAKWNNTLKQICSKL

gp160

335-349

mouse

H-2ⁱ⁵, H-2^k, H-2^t4

TLEQIVKKLREQFGNC

gp160

341-356

human

QIVKKLREQFGNNK

gp160

344-357

human

FGNNKTII

gp160

353-360

macaque

QSSGGDPEIV

gp160

363-372

B

human

SSGGKPEIVTHSFNC

gp160

364-378

human

PEIVTHSFNCGGEFF

gp160

369-383

human

GEFFYCNSTQLFNS?

gp160

380-393

B

human

EFFYCNTTQLFNNTW

gp160

381-395

human

TQLFNSTWFNSTWST

gp160

388-402

B

human

DP4

FNNTWRLNHTEGTKGC

gp160

391-405

human

TWFNSTWSTKGSNNT

gp160

394-408

human

TWSTKGSNNTEGSDT

gp160

399-413

human

SNNTVGNPIILPCRI

gp160

405-420

B

mouse

H-2 IA^b, H2b

LPCRIKQIINMWQEVY

gp160

416-431

human

KQIINMWQEVGKAMYA

gp160

421-436

B, C

chimpanzee, goat, human, mouse

DR, DRB1*13, Ek, H-2^d, H-2^k, H-2^s, H-2^t4, H-2Eα Eβ ^k

KQFINMWQEWGKAMYA

gp160

421-436

human

FINMWQEVGKAMYAPPIS

gp160

423-440

human

INMWQEVGKAMYAPP

gp160

424-438

human

NMWQEVGKAMYAPPI

gp160

425-439

mouse

H-2^s, H-2^t4

MWQEVGKAMYAPPIGC

gp160

426-441

human

VGKAMYAPPISGQIR

gp160

430-444

mouse

H-2^b, H-2^d, H-2^d H-2ⁱ⁵, H-2^k, H-2^s, H-2^t4

AMYAPPIAGLIQCSS

gp160

433-447

D

mouse

H-2 IA^b, H2b

APPIGGQISCSSNITY

gp160

436-451

human

IGGQIRCSSN

gp160

439-448

human

SSNITGLLLTRDGGTC

gp160

446-461

human

RDGGTNVTNDTEVFRC

gp160

456-470

human

GNSNNESEIFRPGGG

gp160

459-473

human

FRPGGGDMRDNWRSEL

gp160

468-483

human

DMRDNWRSELYKYKV

gp160

474-488

human

RDNWRSELYKYKVVK

gp160

476-490

mouse

H-2^d, H-2^k, H-2^s, H-2^t4

YKYKVVKIEPLGV

gp160

484-496

B

macaque

DR*W201

YKYKVVKIEPLGVAP

gp160

484-498

human

CKYKVVKIEPLGVAPT

gp160

484-499

mouse

H-2^d, H-2ⁱ⁵, H-2^k, H-2^t4

KYKVVKIEPLGVAPT

gp160

485-499

mouse

H-2^b, H-2^d, H-2^k, H-2^s

KYKVIKIEPLGIAPTC

gp160

485-500

human

YKVVKIEPL

gp160

486-494

macaque

DRB*W201

TKAKRRVVEREKR

gp160

499-511

human

DR

GIVQQQNNLLRAIEA

gp160

547-561

human

QQHLLQLTVWGIKQL

gp160

562-576

human

LQARILAVERYLKDQQ

gp160

576-591

mouse

H-2^b, H-2^d

YLRDQQLLGIWG

gp160

586-597

chimpanzee, human

YLRDQQLLGIWGC

gp160

586-598

macaque, mouse

LGLWGCSGKLIC

gp160

593-604

mouse

H2^d

LGIWGCSGKLIC

gp160

593-604

human

GIWGCSGKLI

gp160

594-603

human

GIWGCSGKLIC

gp160

594-604

human

CSGKLICTTAVP

gp160

598-609

B

human

CTTAVPWNASWS

gp160

604-615

B

human

TNVPWNASWSNKSLE

gp160

606-620

B

mouse

Class II I Ab, H-2 IA^b

PWNASWSN

gp160

609-616

human

NASWSNKSLE

gp160

611-620

mouse

H-2 IA^b

WSNKSLEDIWDNMTWC

gp160

614-629

human

EQIWNHTTWMEWDRE

gp160

620-634

B

human

DP4

EIDNYTNTIYTLLEEC

gp160

634-649

human

EESQNQQEKNEQELL

gp160

647-661

human

QNQQEKNEQELLE

gp160

650-662

B

human

ASLWNWFNITNWLWY

gp160

667-681

human

IKLFIMIVGGLVGLR

gp160

682-696

human

GIEEEGGERDRDR

gp160

732-744

B

human

RIVELLGRRGWEALK

gp160

780-794

mouse

H-2^d, H-2^k, H-2^s, H-2^t4

KYWWNLLQYWSQELK

gp160

794-808

mouse

H-2^d, H-2^k, H-2^s

LLQYWSQELKNSAVS

gp160

799-813

mouse

H-2^d, H-2^k, H-2^s, H-2^t4

WLNATAIAVTEGTDRC

gp160

814-829

human

AVAEGTDRVIEVVQG

gp160

821-835

mouse

H-2^b, H-2^k, H-2^s

YVAEGTDRVIEVVQGACR

gp160

821-838

human

DRVIEVVQG

gp160

827-835

mouse

H-2^k

DRVIEVVQGAYRAIR

gp160

827-841

B

human, macaque, mouse

H-2^b, H-2ⁱ⁵, H-2^k

DRVIEVVGQAYRAIR

gp160

827-841

C

human

VIEVVQGAYRAIRHI

gp160

829-843

mouse

H-2^b, H-2^k

QGAYRAIR

gp160

834-841

mouse

H-2ⁱ⁵

QGAYRAIRHIPRRIR

gp160

834-848

mouse

H-2^b, H-2^d, H-2ⁱ⁵, H-2^k, H-2^s, H-2^t4

AIRHIPRRIR

gp160

839-848

mouse

H-2^d, H-2^t4

AIRHIPRRIRQGLER

gp160

839-853

human, mouse

H-2^b, H-2^d, H-2^k, H-2^s, H-2^t4

HIPRRIRQGLERILL

gp160

842-856

human

RSVVGWPAVRERMRRA

Nef

8-23

B

human

SAIRERMRR

Nef

14-22

B

human

DRw6

PAVRERMRRAEPAADGV

Nef

14-30

B

human

RRAEPAADGVGAVSRDL

Nef

21-37

B

human

LEKHGAITSSNTAAT

Nef

37-51

human

ITSSNTA

Nef

43-49

B

human

DQw7

SSNTAATNAACAWLE

Nef

45-59

human

AWLEAQEEEEVGF

Nef

56-68

human, mouse, transgenic mouse

DQ, DQ2, DQ3, DQ5, DQ6, DQ7, DQ8

EEVGFPVRPQ

Nef

64-73

B

human

DRw15(2)

EVGFPVIPQVPLRPM

Nef

65-79

human

VGFPVRPQ

Nef

66-73

B

human

DR1, DRw15(2)

QVPLRPMTYKAAVDLSHF

Nef

73-90

B

human

YKAAVDLSHFLKEKGGL

Nef

81-97

B

human

EGLIHSQRRQDILDL

Nef

98-112

chimpanzee

QKRQDILDLWVYHTQGYF

Nef

104-121

B

human

LWVYHTQGYFPDWQNY

Nef

112-127

B

human

LWVYHTGQGYFPDWQNYT

Nef

112-128

B

human

NSLLHPMSLHGMDDPEK

Nef

162-178

B

human

PEKEVLVWKFDSRLAFHH

Nef

176-193

B

human

DRB1*0101, DRB1*0401, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101

LVWRFDSK

Nef

181-188

B

human

DP5

KFDSRLAFHHMARELH

Nef

184-199

B

human

DRB1*0101, DRB1*0701, DRB1*1101, DRB1*1501, DRB5*0101

FDSRLAFHHVARELHP

Nef

185-200

human

LAFHHVARELHPEYF

Nef

189-203

human

AFHHMARELHPEYYKDC

Nef

190-206

B

human

FHHMARELH

Nef

191-199

B

human

DR1