HIV molecular immunology database

 

T-Helper/CD4+ Epitope Summary

Download T-Helper/CD4+ epitope summary as CSV or XLS files.

This is a list of all HIV T-Helper/CD4+ epitopes mapped to within a region of 21 amino acids or less. The protein, HXB2 location, host species, and HLA restriction elements of the epitopes are provided. Identical entries are shown only once. The epitope sequence is a link to the database that will provide details of all epitopes containing that sequence.

Data last updated at 2014-12-12 10:21:00-07
Epitope Protein HXB2 location Subprotein HXB2 DNA Contig Subtype Species HLA
MGARASVLSGGELDRWEK Gag 1-18 p17(1-18) 790..843 B human  
ASILRGGKLDKW Gag 5-16 p17(5-16) 802..837 C human  
VLSGGELDRWE Gag 7-17 p17(7-17) 808..840   macaque  
SGGELDRWEKIRLRPGGK Gag 9-26 p17(9-26) 814..867 B human  
GGKLDAWEKIRLRPG Gag 10-24 p17(10-24) 817..861   human  
LDRWEKIRLRP Gag 13-23 p17(13-23) 826..858   macaque  
EKIRLRPGGKKKYKL Gag 17-31 p17(17-31) 838..882 B human  
EKIRLRPGGKKKYKLKHI Gag 17-34 p17(17-34) 838..891 B human  
EKIRLRPGGKKKYKLHKI Gag 17-34 p17(17-34) 838..891 B human  
RLRPGGKKHYM Gag 20-30 p17(20-30) 847..879 C human  
LRPGGKKKYKLKHIV Gag 21-35 p17(21-35) 850..894   human DR13.02
RPGGKKKY? Gag 22-29 p17(22-29) 853..876 B human  
GKKKYKLKHIVWASREL Gag 25-41 p17(25-41) 862..912 B human  
GKKHYMLKHLVWASREL Gag 25-41 p17(25-41) 862..912 C human  
HYMLKHLVWAS Gag 28-38 p17(28-38) 871..903 C human  
YKLKHIVWASRELER Gag 29-43 p17(29-43) 874..918 B human  
YMIKHIVWASRELER Gag 29-43 p17(29-43) 874..918 B human  
KHIVWASRELERFAV Gag 32-46 p17(32-46) 883..927 B human  
HIVWASRELER Gag 33-47 p17(33-47) 886..930   human  
HIVWASRELERFAVN? Gag 33-47 p17(33-47) 886..930   human  
HIVWASRELERFAVN Gag 33-47 p17(33-47) 886..930 B human  
ASRELERFAVNPGLL Gag 37-51 p17(37-51) 898..942 B human, transgenic mouse DRB*0101, DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1302, DRB1*1501
ASRELERFALNPGLL Gag 37-51 p17(37-51) 898..942 C human  
SRELERFALNPSLLEE Gag 38-53 p17(38-53) 901..948   human  
RELERFAVN Gag 39-47 p17(39-47) 904..930 B human DRB1*1302
LERFAVNPGLL Gag 41-51 p17(41-51) 910..942 B human DRB1*1302
LERFAVNPGLLETSE Gag 41-55 p17(41-55) 910..954 B human, transgenic mouse DRB1*0101
ERFAVNPGLL Gag 42-51 p17(42-51) 913..942 B human DRB3*0202, DRB3*0301
ERFALNPSLLETAEG Gag 42-56 p17(42-56) 913..957   human  
ERFAVNPGLLETSEGCR Gag 42-58 p17(42-58) 913..963 B human DRB1*0101, DRB1*0405, DRB1*1101, DRB1*1302
ERFALNPGLLETSEGGK Gag 42-58 p17(42-58) 913..963 C human  
PGLLETSEGCK Gag 48-58 p17(48-58) 931..963 C human  
GLLETSEGCRQILGQL Gag 49-64 p17(49-64) 934..981   human  
EGCRQILGQLQPSLQTGS Gag 55-72 p17(55-72) 952..1005   human  
TGSEELRSLYNTVATLY Gag 70-86 p17(70-86) 997..1047 B human  
TSEELKSLFVTVATL Gag 71-85 p17(71-85) 1000..1044   human  
EELRSLYNTVA Gag 73-83 p17(73-83) 1006..1038   macaque  
EELRSLYNTVATLYC Gag 73-87 p17(73-87) 1006..1050 B human, transgenic mouse DRB1*0101
LKSLFNTVATLYCVH Gag 75-89 p17(75-89) 1012..1056   human  
SLYNTVATLYCVHQR Gag 77-91 p17(77-91) 1018..1062 B human, transgenic mouse DRB1*0101
SLYNTVATLYCVHQRIEV Gag 77-94 p17(77-94) 1018..1071 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1302, DRB5*0101
TVATLYCVHQRIEVK Gag 81-95 p17(81-95) 1030..1074 B transgenic mouse DRB1*0101
VATLYCVHAGI Gag 82-92 p17(82-92) 1033..1065 C human  
LYCVHQRIEVKDTKE Gag 85-99 p17(85-99) 1042..1086 B transgenic mouse DRB1*0101
EIKDTKEALDKIEEE Gag 93-107 p17(93-107) 1066..1110   human  
AAADTGHSSQVSQNY Gag 118-132 p17(118-132) 1141..1185   human  
SQVSQNYPIVQNLQGQMV Gag 126-143 p17(126)-p24(11) 1165..1218   human  
PIVQNIQGQ Gag 133-141 p24(1-9) 1186..1212 B human DRB1*0101
PIVQNLQGQMV Gag 133-143 p24(1-11) 1186..1218   human DR1
PIVQNIQGQMVHQAI Gag 133-147 p24(1-15) 1186..1230   human  
QGQMVHQAISPRTLN Gag 139-153 p24(7-21) 1204..1248   human, mouse, transgenic mouse DR, DR supermotif, I-Ab
QMVHQAISPRTLNAWVKV Gag 141-158 p24(9-26) 1210..1263 B, C human  
VHQAISPRTLNAWVKC Gag 143-158 p24(11-26) 1216..1263   human  
PRTLNAWVKVVEEKAF Gag 149-164 p24(17-32) 1234..1281   human  
NAWVKVVEEKAFSPE Gag 153-167 p24(21-35) 1246..1290 B mouse H-2d
NAWVKVVEEKAFSPEC Gag 153-168 p24(21-36) 1246..1293   human  
AWVKVIEEKAFSPEV Gag 154-168 p24(22-36) 1249..1293   human  
WVKVVEEKAFSPEVIPMF Gag 155-172 p24(23-40) 1252..1305 B human  
WKVVEEKAFSPEVIPMF Gag 155-172 p24(23-40) 1252..1305 B human  
KVVEEKAFSPEVIPM Gag 157-171 p24(25-39) 1258..1302   human  
EEKAFSPEV Gag 160-168 p24(28-36) 1267..1293 B human DRB1*0101
EEKAFSPEVIP Gag 160-170 p24(28-38) 1267..1299 B human DQ5
EKAFSPEVIPMFSAL Gag 161-175 p24(29-43) 1270..1314 B transgenic mouse DRB1*0101
AFSPEVIPMFT Gag 163-173 p24(31-41) 1276..1308 C human  
AFSPEVIPMFSALSEC Gag 163-178 p24(31-46) 1276..1323   human  
AFSPEVIPMFSALSEGA Gag 163-179 p24(31-47) 1276..1326 B human  
AFSPEVIPMFTALSEGA Gag 163-179 p24(31-47) 1276..1326 C human  
AFSPEVIPMFSALSEGAT Gag 163-180 p24(31-48) 1276..1329 B human  
FSPEVIPMFSALSEG Gag 164-178 p24(32-46) 1279..1323 B human  
SPEVIPMFSALSEGA Gag 165-179 p24(33-47) 1282..1326 B transgenic mouse DRB1*0101
PEVIPMFSALSEGATP Gag 166-181 p24(34-49) 1285..1332 B human DR1
EVIPMFSALS Gag 167-176 p24(35-44) 1288..1317 B human DR4, DRB1*0101
IPMFSALSEGATPQD Gag 169-183 p24(37-51) 1294..1338 B transgenic mouse DRB1*0101
PMFTALSEGAT Gag 170-180 p24(38-48) 1297..1329 C human  
SALSEGATPQDLNTMC Gag 173-188 p24(41-56) 1306..1353   human  
TPQDLNTMLNTVGGH Gag 180-194 p24(48-62) 1327..1371   human  
PQDLNTMLNTVGGHQ Gag 181-195 p24(49-63) 1330..1374 B human  
PQDLNMMLNIVGGHQA Gag 181-196 p24(49-64) 1330..1377   human  
DLNTMLNTYGGHQAAC Gag 183-198 p24(51-66) 1336..1383   human  
NTMLNTVGGHQAAM Gag 185-198 p24(53-66) 1342..1383 C human  
GGHQAAMQMLKDTINEEA Gag 192-209 p24(60-77) 1363..1416 C human  
AMQMKLETINEEAAE Gag 197-211 p24(65-79) 1378..1422   human  
AMQMLKETINEEAAE Gag 197-211 p24(65-79) 1378..1422   human  
ETINEEAAEWDRVHPC Gag 203-218 p24(71-86) 1396..1443 B human  
ETINEEAAEWDRVHPVHA Gag 203-220 p24(71-88) 1396..1449 B human DRB1*0101
INEEAAEWDRL Gag 205-215 p24(73-83) 1402..1434 C human  
INEEAAEWDRV Gag 205-215 p24(73-83) 1402..1434   macaque  
EAAEWDRVHP Gag 208-217 p24(76-85) 1411..1440   human  
EAAEWDRVHPVHAGP Gag 208-222 p24(76-90) 1411..1455   human  
AAEWDRLHPVHAGPIA Gag 209-224 p24(77-92) 1414..1461   human  
EWDRVHPVHA Gag 211-220 p24(79-88) 1420..1449 B human DRB1*0101
DRVHPVHAGPIAPGQ Gag 213-227 p24(81-95) 1426..1470   macaque  
RLHPVHAGPIA Gag 214-224 p24(82-92) 1429..1461 C human  
LHPVHAGPIAPGQMREPR Gag 215-232 p24(83-100) 1432..1485 C human  
PVHGPIAPGQMREP Gag 217-231 p24(85-99) 1438..1482   human  
VHAGPIAPG Gag 218-226 p24(86-94) 1441..1467 B human DQ7
HAGPIAPGQMREPRG Gag 219-233 p24(87-101) 1444..1488   mouse H-2b
IAPGQMREPRGSDIA Gag 223-237 p24(91-105) 1456..1500   human  
PGQMREPRGSDIAGT Gag 225-239 p24(93-107) 1462..1506   human  
GQMREPRGSDI Gag 226-236 p24(94-104) 1465..1497 C human  
MREPRGSD Gag 228-235 p24(96-103) 1471..1494 B human  
MREPRGSKIAGTTST Gag 228-242 p24(96-110) 1471..1515   human  
REPRGSDIAGTTSTL Gag 229-243 p24(97-111) 1474..1518   human  
EPRGSDIAGT Gag 230-239 p24(98-107) 1477..1506 B human DQ7
GSDIAGTTSTLQEQI Gag 233-247 p24(101-115) 1486..1530 B human, macaque, transgenic mouse DRB1*0101
GSDIAGTTSTLQEQIC Gag 233-248 p24(101-116) 1486..1533   human  
GTTSTLQEQIA Gag 238-248 p24(106-116) 1501..1533 C human  
STLQEQIGWMTNNPP Gag 241-255 p24(109-123) 1510..1554 B human, transgenic mouse DRB1*0101
STLQEQIGWMTNNPPIPV Gag 241-258 p24(109-126) 1510..1563   human  
EQIGWMTNNPPIPVG Gag 245-259 p24(113-127) 1522..1566 B transgenic mouse DRB1*0101
EQIAWMTSNPPVPVG Gag 245-259 p24(113-127) 1522..1566 C human  
WMTSNPPVPVG Gag 249-259 p24(117-127) 1534..1566 C human  
WMTNNPPIPVGEIYK Gag 249-263 p24(117-131) 1534..1578 B transgenic mouse DRB1*0101
TNNPPIPBGEIYKRW Gag 251-265 p24(119-133) 1540..1584 B human DRB1*1301
NPPIPVGEIYKRWII Gag 253-267 p24(121-135) 1546..1590 B, C human, transgenic mouse DRB1*0101
NPPIPVGEIYKRWIIC Gag 253-268 p24(121-136) 1546..1593   human  
PVGEIYKRWIILGLN Gag 257-271 p24(125-139) 1558..1602 B human, mouse, transgenic mouse DRB1*0101, H-2d
PVGDIYKRWIILGLNKIV Gag 257-274 p24(125-142) 1558..1611 C human  
PVGEIYKRWIILGLNKIV Gag 257-274 p24(125-142) 1558..1611   human  
GEIYKRWIILGLNKI Gag 259-273 p24(127-141) 1564..1608 B, C human, transgenic mouse DR, DR supermotif
GEIYRWIILGLNKI Gag 259-273 p24(127-141) 1564..1608   human DR supermotif
EIYRWIILG Gag 260-269 p24(128-137) 1567..1596   human DRB1*1301, DRB1*1302
EIYKRWIILG Gag 260-269 p24(128-137) 1567..1596   human DRB1*1301, DRB1*1302
DVYKRWIILGLNKIV Gag 260-274 p24(128-142) 1567..1611 B human  
IYKRWIILGLNKIVR Gag 261-275 p24(129-143) 1570..1614 B human, transgenic mouse DRB1*0101
KRWIILGLNKIVRMY Gag 263-277 p24(131-145) 1576..1620 A, B human, macaque, transgenic mouse DR, DR supermotif, DR1
RWIILGLNKIVRMYS Gag 264-278 p24(132-146) 1579..1623 B human  
WIILGLNKIVR Gag 265-275 p24(133-143) 1582..1614   macaque  
WIILGLNKIVRM Gag 265-276 p24(133-144) 1582..1617 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
WIILGLNKIVRMYSP Gag 265-279 p24(133-147) 1582..1626 B human, transgenic mouse DRB1*0101
WIILGLNKIVRMYSPTSI Gag 265-282 p24(133-150) 1582..1635 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
WILLGLNKIVRMYSPTSI Gag 265-282 p24(133-150) 1582..1635 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
WIILGLNKIVRMYSPVSI Gag 265-282 p24(133-150) 1582..1635 C baboon, human  
ILGLNKIVRMY Gag 267-277 p24(135-145) 1588..1620 B human DRB1*0401, DRB1*1302, DRB1*1501
ILGLNKIVRMYSPVS Gag 267-281 p24(135-149) 1588..1632 B human  
GLNKIVRMYSPTSIL Gag 269-283 p24(137-151) 1594..1638 B human, transgenic mouse DRB1*0101
GLNKIVRMYSPVSIL Gag 269-283 p24(137-151) 1594..1638 B human  
LNKIVRMYSPVSILD Gag 270-284 p24(138-152) 1597..1641   human  
LNKIVRMYSPTSILD Gag 270-284 p24(138-152) 1597..1641 B, C human  
NKIVRMYSPT Gag 271-280 p24(139-148) 1600..1629 AG macaque  
KIVRMYSPT Gag 272-280 p24(140-148) 1603..1629 B human DRB1*0101
KIVRMYSPTS Gag 272-281 p24(140-149) 1603..1632   human DR4
IVRMYSPTSILDIRQ Gag 273-287 p24(141-155) 1606..1650 B transgenic mouse DRB1*0101
IVRMYSPVSILDIKQ Gag 273-287 p24(141-155) 1606..1650 B human  
IVRMYSPTSILDIRQC Gag 273-288 p24(141-156) 1606..1653   human  
IVRMYSPTSILDIRQGPK Gag 273-290 p24(141-158) 1606..1659 B human  
YSPTSILDIRQGPKE Gag 277-291 p24(145-159) 1618..1662 B transgenic mouse DRB1*0101
SPTSILDIRQGPKEP Gag 278-292 p24(146-160) 1621..1665   human  
SILDIRQGPKEPFRD Gag 281-295 p24(149-163) 1630..1674 B transgenic mouse DRB1*0101
SILDIRQGPKEPFRDYV Gag 281-297 p24(149-165) 1630..1680   human  
LDIRQGPKEPFRDYVC Gag 283-298 p24(151-166) 1636..1683   human  
IRQGPKEPFRDYVDR Gag 285-299 p24(153-167) 1642..1686   human  
GPKEPFRDYVDRFYK Gag 288-302 p24(156-170) 1651..1695   human  
GPKEPFRDYVDRFYKTLR Gag 288-305 p24(156-173) 1651..1704 B human  
PKEPFRDYV Gag 289-297 p24(157-165) 1654..1680 B human DQ5
ESFRDYVDRFYKTLR Gag 291-305 p24(159-173) 1660..1704 B human  
FRDYVDRFFKT Gag 293-303 p24(161-171) 1666..1698 C human  
FRDYVDRFYKTLRAE Gag 293-307 p24(161-175) 1666..1710   human DQA1*01/DQB1*05
DYVDRFYKTLRAE Gag 295-307 p24(163-175) 1672..1710   human DR0101
DYVDRFYKTLRAEQA Gag 295-309 p24(163-177) 1672..1716   human DRB1*1302
YVDRFYKTLRAEQASQEV Gag 296-313 p24(164-181) 1675..1728 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
YVDRFFKTLRAEQATQDV Gag 296-313 p24(164-181) 1675..1728 B, C human  
VDRFYKTLRAEQASQ Gag 297-311 p24(165-179) 1678..1722 B human, mouse, transgenic mouse DRB1*0101, H-2d
DRFFKTLRAEQAT Gag 298-310 p24(166-178) 1681..1719   human  
DRFYKTLRAEQASQ Gag 298-311 p24(166-179) 1681..1722   human DRB1*0401
DRFFKTLRAEQATQE Gag 298-312 p24(166-180) 1681..1725   human  
RFYKTLRAEQAS Gag 299-310 p24(167-178) 1684..1719 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*0701, DRB1*1101, DRB1*1501, DRB5*0101
FYKTLRAEQASQ Gag 300-311 p24(168-179) 1687..1722 B human DRB1*0101, DRB1*0401, DRB1*1101, DRB5*0101
FYKTLRAEQASQE Gag 300-312 p24(168-180) 1687..1725 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*1101, DRB1*1501, DRB5*0101
FFKTLRAEQATQE Gag 300-312 p24(168-180) 1687..1725   human  
YKTLRAEQA Gag 301-309 p24(169-177) 1690..1716 B human DRB1*0101
YKTLRAEQAS Gag 301-310 p24(169-178) 1690..1719 AG macaque  
YKTLRAEQASQ Gag 301-311 p24(169-179) 1690..1722   macaque  
YKTLRAEQASQEVKN Gag 301-315 p24(169-183) 1690..1734 B human, transgenic mouse DRB1*0101
LRAEQASQEVKNWMTETL Gag 304-321 p24(172-189) 1699..1752   human  
RAEQASQEVKNWMTE Gag 305-319 p24(173-187) 1702..1746 B human, transgenic mouse DRB1*0101
EVKNWMTDTLLVQNA Gag 312-326 p24(180-194) 1723..1767 B human  
EVKNWMTETLLVQNA Gag 312-326 p24(180-194) 1723..1767 B human  
DVKNWMTDTLLQNA Gag 312-326 p24(180-194) 1723..1767 C human  
VKNWMTETLLVQNAN Gag 313-327 p24(181-195) 1726..1770 B transgenic mouse DRB1*0101
VKNWMTETLLVQNANC Gag 313-330 p24(181-198) 1726..1779   human  
NWMTDILLVQNANPD Gag 315-329 p24(183-197) 1732..1776 B human  
MTETLLVQNANPDCKTIL Gag 317-334 p24(185-202) 1738..1791 B human  
MTDTLLQNANPDCKTIL Gag 317-334 p24(185-202) 1738..1791 C human  
LLVQNANPDCKTILR Gag 321-335 p24(189-203) 1750..1794 C human  
NANPDCKTILKALGPAA Gag 325-341 p24(193-209) 1762..1812   human  
ILKALGPAATLEEMM Gag 333-347 p24(201-215) 1786..1830 B human  
LGPAATLEEMMTACQ Gag 337-351 p24(205-219) 1798..1842 B human  
ACQGVGGPGHKARVLAEA Gag 349-366 p24(217)-p2p7p1p6(3) 1834..1887   human  
PSHKARVLAEAMSQA Gag 356-370 p24(224)-p2p7p1p6(7) 1855..1899 B human  
GHKARVLAEAMSQVTNSA Gag 357-374 p24(225)-p2p7p1p6(11) 1858..1911   human  
EAMSQVTNSATIMMQR Gag 365-380 p2p7p1p6(2-17) 1882..1929   human  
TNSATIMMQRGNFRNQRK Gag 371-388 p2p7p1p6(8-25) 1900..1953 B human  
QRGNFRNQRKTVKCF Gag 379-393 p2p7p1p6(16-30) 1924..1968 B human  
RNQRKTVKCFNCGKEGHI Gag 384-401 p2p7p1p6(21-38) 1939..1992   human  
NQRKIVKCFNC Gag 385-395 p2p7p1p6(22-32) 1942..1974   macaque  
VKCFNCGKGEH Gag 390-400 p2p7p1p6(27-37) 1957..1989 C human  
FNCGKEGHTARNCRA Gag 393-407 p2p7p1p6(30-44) 1966..2010   human  
HIAKNCRAPRKKGCWK Gag 400-415 p2p7p1p6(37-52) 1987..2034 B human  
RAPRKKGCWKCGKEGHQM Gag 406-423 p2p7p1p6(43-60) 2005..2058 B human  
KEGHQMKDCTERQAN Gag 418-432 p2p7p1p6(55-69) 2041..2085   human  
MKDCTERQANFLGKI Gag 423-437 p2p7p1p6(60-74) 2056..2100   human  
DCTERQANFLG Gag 425-435 p2p7p1p6(62-72) 2062..2094 C human  
RQANFLGKIWPSHKGR Gag 429-444 p2p7p1p6(66-81) 2074..2121 B human DRB1*0101, DRB1*0401, DRB1*0405, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
GKIWPSHKGRPGNFLQSR Gag 435-452 p2p7p1p6(72-89) 2092..2145 B, C human  
PSYKGRPG Gag 439-446 p2p7p1p6(76-83) 2104..2127 B human  
GRPGNFLQSRPEPTA Gag 443-457 p2p7p1p6(80-94) 2116..2160   human  
GNFLQSRPEPTAPPA Gag 446-460 p2p7p1p6(83-97) 2125..2169   mouse H-2b
FLQSRPEPTAPPEESFRF Gag 448-465 p2p7p1p6(85-102) 2131..2184   human  
REETTTPS Gag 452-459 p2p7p1p6(89-96) 2143..2166 B human  
ESFRSGVETTTPPQK Gag 461-475 p2p7p1p6(98-112) 2170..2214   human  
GEETTTPSQKQEPIDKEL Gag 466-483 p2p7p1p6(103-120) 2185..2238 B human  
FEETTPAPPKQ Gag 467-476 p2p7p1p6(104-113) 2188..2217 C human  
TTTPPQKQEPI Gag 469-479 p2p7p1p6(106-116) 2194..2226   macaque  
QKQEPIDKELYPLASLR Gag 474-490 p2p7p1p6(111-127) 2209..2259 B human  
EPIDKELYPLASLRS Gag 477-491 p2p7p1p6(114-128) 2218..2262   human  
KDREPLTSLKS Gag 481-491 p2p7p1p6(118-128) 2230..2262 C human  
FIKVRQYDQIPIEICGKK Pol 109-126 Protease(53-70) 2409..2462 C human  
QEPFKNLKTGKYAKM Pol 109-131 Protease(53-75) 2409..2477 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
PTPVNIIGRNMLTQIGC Pol 135-151 Protease(79-95) 2487..2537 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
PVNIIGRNLLTQIGC Pol 137-151 Protease(81-95) 2493..2537   mouse, transgenic mouse  
NFPISPIETVPVKLR Pol 154-168 Protease(98)-RT(13) 2544..2588 B human  
EICTEMEKEGKISKIGP Pol 191-207 RT(36-52) 2655..2705   human  
CTEMEKEGKISKIGP Pol 193-207 RT(38-52) 2661..2705   mouse H-2k
TEMEKEGKISKIGPE Pol 194-208 RT(39-53) 2664..2708   human  
ITKIGPENPYNTPIFAIK Pol 202-219 RT(47-64) 2688..2741 C baboon  
SKIGPENPYNTPVFA Pol 203-217 RT(48-62) 2691..2735   mouse H-2k
FAIKKKDSTKWR Pol 216-227 RT(61-72) 2730..2765 B mouse  
AIKKKDSTKWRKLVDF Pol 217-232 RT(62-77) 2733..2780   mouse H-2k
WEVQLGIPHPAGLKK Pol 243-257 RT(88-102) 2811..2855   mouse H-2t4
PSGLKKKKSVTVLDM Pol 252-266 RT(97-111) 2838..2882 B human  
FRKYTAFTIPSINNE Pol 279-293 RT(124-138) 2919..2963   human, mouse, transgenic mouse DR, DR supermotif, I-Ab
PSINNETPGIRYQYN Pol 288-302 RT(133-147) 2946..2990   mouse H-2i5, H-2k
YQYNVLPQGWKGSPA Pol 299-313 RT(144-158) 2979..3023   mouse H-2t4
SPAIFQSSMTKILEP Pol 311-325 RT(156-170) 3015..3059   human, mouse, transgenic mouse DR, DR supermotif, I-Ab
SPAIFQCSSMTKILEP Pol 311-325 RT(156-170) 3015..3059   human DR supermotif
MTKILEPFRKQNPDIVIY Pol 319-336 RT(164-181) 3039..3092 B human  
VIYQYMDDL Pol 334-342 RT(179-187) 3084..3110 B mouse  
IGQHRTKIEELRQHL Pol 350-364 RT(195-209) 3132..3176   human  
RTHLLRWGLTTP Pol 361-372 RT(206-217) 3165..3200 B mouse  
GLTTPDKKNNN Pol 368-378 RT(213-223) 3186..3218 B mouse  
KDSWTVNDIQKLVGK Pol 404-418 RT(249-263) 3294..3338   human, transgenic mouse DR, DR5, DR5(11.01)
KDSSTVNDIQKLVGK Pol 404-418 RT(249-263) 3294..3338 B human DRS
KDSWTWNDIQKLVGK Pol 404-418 RT(249-263) 3294..3338   human  
SSTVNDIQKLV Pol 406-416 RT(251-261) 3300..3332   human DR5(11.01)
SWTVNDIQKLVGKLV Pol 406-420 RT(251-265) 3300..3344 B human  
VHDIQKLVGKLNWAS Pol 409-423 RT(254-268) 3309..3353 B human  
QKLWGKLNWASQIYP Pol 413-427 RT(258-272) 3321..3365   human  
WRQLCKLLRGTKALT Pol 431-445 RT(276-290) 3375..3419   human  
GTKALTEVIPLTEEA Pol 440-454 RT(285-299) 3402..3446   human  
PLTEEAELELAENRE Pol 449-463 RT(294-308) 3429..3473   human  
LAENREILKEPVHGV Pol 458-472 RT(303-317) 3456..3500   human  
TYQIYQEPFKNLKTG Pol 493-507 RT(338-352) 3561..3605 B human DP4
YAKMRSAHTNDVKQL Pol 509-523 RT(354-368) 3609..3653 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
GKTPKFKLPIQKETW Pol 539-553 RT(384-398) 3699..3743   human  
IPEWEFVNTPPLVKL Pol 566-580 RT(411-425) 3780..3824 B human  
EWEFVNTPPLVKLWY Pol 568-582 RT(413-427) 3786..3830 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
KWEFVNTPPLVKLWY Pol 568-582 RT(413-427) 3786..3830 B human  
WEFVNTPPLVKLWYQ Pol 569-583 RT(414-428) 3789..3833   human DR supermotif
LEKEPIVGAETFYVD Pol 584-598 RT(429-443) 3834..3878   human  
KEPIVGAETFYVDGA Pol 586-600 RT(431-445) 3840..3884 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
AETFYVDGAANRETK Pol 592-606 RT(437-451) 3858..3902   transgenic mouse DR
TDTTNQKTELQAIYLQL Pol 625-641 RT(470-486) 3957..4007 B mouse  
IKKEKVYLAWVPAHK Pol 681-695 RT(526-540) 4125..4169 B mouse H-2 Ad, H-2Dd
KEKVYLAWVPAHK Pol 683-695 RT(528-540) 4131..4169   mouse H-2b, H-2d, H-2k
KEKVYLAWVPAHKG Pol 683-696 RT(528-541) 4131..4172 B mouse H-2 Ad, H-2Dd
KEKVYLAWVPAHKGIG Pol 683-698 RT(528-543) 4131..4178   mouse H-2d, H-2f, H-2k
EKVYLAWVPAHKGIG Pol 684-698 RT(529-543) 4134..4178   human, mouse, transgenic mouse DR, DR supermotif, I-Ab
KVYLAWVPAHKGIGG Pol 685-699 RT(530-544) 4137..4181   human, transgenic mouse DR, DR supermotif
SAGIRKVLFLD Pol 708-718 RT(553)-Integrase(3) 4206..4238 B human  
HSNWRAMASDFNLPP Pol 731-745 Integrase(16-30) 4275..4319   human DR supermotif
LPPIVAKEIVASCDKC Pol 743-758 Integrase(28-43) 4311..4358 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
EGKIILVAVHVASGYIE Pol 784-800 Integrase(69-85) 4434..4484 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
VTSGYIEAEVIPAET Pol 794-808 Integrase(79-93) 4464..4508 B human  
ETAYFILKLAGRWPVKVI Pol 811-828 Integrase(96-113) 4515..4568 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
HLKTAVQMAVYIHNF Pol 886-900 Integrase(171-185) 4740..4784 B human  
LKTAVQMAVFIHNFK Pol 887-901 Integrase(172-186) 4743..4787 B human  
KTAVQMAVFIHNFKR Pol 888-902 Integrase(173-187) 4746..4790   human, transgenic mouse DR, DR supermotif
KTAVQMAVFFIHNFKR Pol 888-902 Integrase(173-187) 4746..4790   human DR supermotif
RKGGIGGYSAGERIVDII Pol 902-919 Integrase(187-204) 4788..4841 B human  
SAGERIVDIIATDIQTK Pol 910-926 Integrase(195-211) 4812..4862 B human  
AGERIVDIIATDIQT Pol 911-925 Integrase(196-210) 4815..4859 B human  
TEKLQKQITKIQNFRVYY Pol 925-942 Integrase(210-227) 4857..4910 B human DR supermotif
ELKKIIGQVRDQAEHLK Pol 925-942 Integrase(210-227) 4857..4910 B human  
QKQITKIQNFRVYYR Pol 929-943 Integrase(214-228) 4869..4913   human, transgenic mouse DR, DR supermotif
KQITKIQNFRVYY Pol 930-942 Integrase(215-227) 4872..4910 B human  
ISKFRVYYRDSRDPI Pol 935-949 Integrase(220-234) 4887..4931 B human  
LWKGEGAVVIQDNSDIKV Pol 957-974 Integrase(242-259) 4953..5006 B human  
VIQDNSDIKVVPRRKAKI Pol 965-982 Integrase(250-267) 4977..5030 B human  
VITTYWGLHTGE Vif 65-76   5233..5268   human  
LGQGVSIEWRKQRYST Vif 81-96   5281..5328   human  
RHFPRIWLHGLGQHI Vpr 32-46   5652..5696 B human  
PRIWLHGLGQHIYET Vpr 35-49   5661..5705 B human DRB5
ETYGDTWAGVEAIIR Vpr 48-62   5700..5744 B human DRB5
DTWAGVEAIIRILQQ Vpr 52-66   5712..5756 B human DR11, DRB5
LQQLLFIHFRIGCRHS Vpr 64-79   5748..5795 B human DR11
QLLFIHFRIGCRHSR Vpr 66-80   5754..5798   human, mouse H-2d
IHFRIGCRHSRIGVT Vpr 70-84   5766..5810 B human DR11, DR3, DRB5
SRIGILRQRRARNGASRS Vpr 79-96   5793..5846 C human  
QPKTACTNCYCKKCCF Tat 17-32   5879..5926 B human DR5? plus others
QPKTACTNCYCKRCCF Tat 17-32   5879..5926   human  
SYHCLVCFQTKGLGI Tat 31-45   5921..5965 B human  
HCQVCFITKALGISYG Tat 33-48   5927..5974   human DR5? plus others
HCQVCFMTKGLGISYG Tat 33-48   5927..5974   human  
VCFITKALGISYGRK? Tat 36-50   5936..5980 B mouse H-2d
ITKALGISYGRKKRR Tat 39-53   5945..5989 B human  
KGLGISYGRK? Tat 41-50   5951..5980 C mouse  
KALGISYGRKKRRQR Tat 41-55   5951..5995 B human DR11, DR13, DR3, DRB5
RRAHQNSQTHQASLS? Tat 56-70   5996..6040 B mouse H-2d
DHQNLISKQPLPRTQ Tat 64-80   6020..6045, 8379..8403 B human  
HQASLSKQPTSQPRGD Tat 65-80   6023..6045, 8379..8403 B human DR2? plus others
DEELIRTVRLIKLLY Rev 9-23   5994..6038 B human  
KTVRLIKFLYQSNPPPS Rev 14-30   6009..6045, 8379..8392 B human  
SNPPPNPEGTRQARR Rev 25-39   6042..6045, 8379..8419 B human  
GTRQARRNRRRRWRER Rev 33-48   8399..8446 B human  
RRRRWRERQRQIHSIS Rev 41-56   8423..8470 B human  
IVALIIAIVVWTIV Vpu 13-26   6098..6139 A1, B, C, D, F1, F2, G, H human, humanized mouse, mouse  
AIVVWSIVLIEYRKIL Vpu 19-34   6116..6163   human  
YRKILRQRKIDRLID Vpu 30-44   6149..6193   transgenic mouse DR
AAEQLWVTVYYGVPVWK gp160 30-46 gp120(30-46) 6312..6362 B human  
TEKLWVTVYYGVPVW gp160 31-45 gp120(31-45) 6315..6359 B human DP4
VGLNWVTVYYGVPVWKEA gp160 31-48 gp120(31-48) 6315..6368 C human  
EQLWVTVYYGVPV gp160 32-44 gp120(32-44) 6318..6356   mouse H-2bxk
KLWVTVYYGVPVWKE gp160 33-47 gp120(33-47) 6321..6365 B human  
WVTVYYGVPVWKGAT gp160 35-49 gp120(35-49) 6327..6371 C human  
WVTVYYGVPVWKDAE gp160 35-49 gp120(35-49) 6327..6371 B human  
VYYGVPVWKEA gp160 38-48 gp120(38-48) 6336..6368   chimpanzee, human, macaque, mouse H-2bxk, H-2sxd
GVPVWKEATTLFC gp160 41-54 gp120(41-54) 6345..6386   macaque, mouse H-2sxd
REAKTTLFCASDAKAYDR gp160 46-63 gp120(46-63) 6360..6413 C baboon  
GATTTLFCASDAKAY gp160 47-61 gp120(47-61) 6363..6407 C human  
TTLFCASKAKAYDTE gp160 50-64 gp120(50-64) 6372..6416 C human  
AHKVWATHACV gp160 65-75 gp120(65-75) 6417..6449   mouse H-2bxk, H-2sxd
THACVPADPNPQEMV gp160 71-85 gp120(71-85) 6435..6479 C human  
CVPTNPVPQEVV gp160 74-85 gp120(74-85) 6444..6479   mouse H-2bxk, H-2sxd
CVPTDPNPQEVV gp160 74-85 gp120(74-85) 6444..6479 B human  
ENVTENFNMWKNEMV gp160 87-101 gp120(87-101) 6483..6527 C human  
NVTENFNMWKNNMVEQMH gp160 88-105 gp120(88-105) 6486..6539 B human  
ENFNMWKNEMVNQMQ gp160 91-105 gp120(91-105) 6495..6539 C human  
YFNMWKNNMV gp160 92-101 gp120(92-101) 6498..6527   human  
EMVNQMQEDVISLWD gp160 99-113 gp120(99-113) 6519..6563 C human  
EQMHEDIISLWDQ gp160 102-114 gp120(102-114) 6528..6566   mouse H-2bxk
EQMHEDIISLWDQSL gp160 102-116 gp120(102-116) 6528..6572   mouse H-2b, H-2d, H-2i5
HEDIISLWDQSLK gp160 105-117 gp120(105-117) 6537..6575 B, C human, macaque, mouse H-2k
IISLWDQSLKPC gp160 108-119 gp120(108-119) 6546..6581 B, BF, C, F human  
SLWDQSLKPCVKLTPL gp160 110-125 gp120(110-125) 6552..6599 B, BF, C, F human  
LWDQSLKPCVKLT gp160 111-123 gp120(111-123) 6555..6593   macaque  
SLKPCVKLTPLC gp160 115-126 gp120(115-126) 6567..6602 B human  
SLKPCVKLTPLCVSL gp160 115-129 gp120(115-129) 6567..6611 B human DR
CVKLTPLCVTLECRN gp160 119-133 gp120(119-133) 6579..6623 C human  
KNCSFNISTSIRGKV gp160 155-169 gp120(155-169) 6687..6731 B human DR
KNCSFNITTELIDKK gp160 155-169 gp120(155-169) 6687..6731   mouse H-2 IAb
NCSFNATTVVRDRDQ gp160 156-170 gp120(156-170) 6690..6734 C human  
NATTVVRDRKQTVYA gp160 160-174 gp120(160-174) 6702..6746 C human  
VYALFYRLDIVPLTK gp160 172-186 gp120(172-186) 6738..6782 C human  
LFYKLDVVQIDNSTN gp160 175-189 gp120(175-189) 6747..6791   mouse H-2 IAb
FYRLDIVPLTKNYS gp160 176-189 gp120(176-189) 6750..6791 C human  
INCNTSAITQACPKV gp160 194-208 gp120(194-208) 6804..6848 C human  
TSVITQACPKVSFEP gp160 198-212 gp120(198-212) 6816..6860   mouse H-2 IAb
TSVITQACPKVSFEPIPI gp160 198-215 gp120(198-215) 6816..6869   mouse H-2 IAb
SVITQACSKVSFE gp160 199-211 gp120(199-211) 6819..6857   chimpanzee, human, macaque, mouse H-2bxk, H-2sxd
VITQACPKVSFEPIP gp160 200-214 gp120(200-214) 6822..6866 B human DR
ITQACPKVSFEP gp160 201-212 gp120(201-212) 6825..6860   mouse H-2 IAb
ITQACPKVSFEPIPI gp160 201-215 gp120(201-215) 6825..6869 A, B, C, D mouse  
PKVSFEPIPIHYCAP gp160 206-220 gp120(206-220) 6840..6884 A, B, C, D mouse H-2 IAb, H-2b
PKVTFDPIPIHYCTP gp160 206-220 gp120(206-220) 6840..6884 C human  
KVSFEPIPIHYCAPAGFA gp160 207-224 gp120(207-224) 6843..6896 B human  
KVSFDPIPIHYCAPAGYA gp160 207-224 gp120(207-224) 6843..6896 C baboon  
ITFEPIPIHYC gp160 208-218 gp120(208-218) 6846..6878   mouse H-2 IAb
ITFEPIPIHYCAPAG gp160 208-222 gp120(208-222) 6846..6890 B, D mouse H-2 IAb
SFEPIPIHYCAP gp160 209-220 gp120(209-220) 6849..6884 B human DR
FEPIPIHYC gp160 210-218 gp120(210-218) 6852..6878 B mouse  
FEPIPIHYCAFPGF gp160 210-223 gp120(210-223) 6852..6893   mouse H-2bxk
FDPIPIHYCTPAGYA gp160 210-224 gp120(210-224) 6852..6896 C human  
EPIPIHYCAPAGFAI gp160 211-225 gp120(211-225) 6855..6899 B, D mouse  
PIHYCAP gp160 214-220 gp120(214-220) 6864..6884   mouse H-2 IAb
PIHYCAPAGFAILK gp160 214-227 gp120(214-227) 6864..6905   human  
IHYCAPAGFAI gp160 215-225 gp120(215-225) 6867..6899   mouse H-2 IAb
HYCAPAGFAI gp160 216-225 gp120(216-225) 6870..6899   mouse H-2 IAb
PAGFAILKCNNKTFN gp160 220-234 gp120(220-234) 6882..6926   human  
PAGFAILKCNNKTFNY gp160 220-235 gp120(220-235) 6882..6929 B human DR2
FAILKCNNK gp160 223-231 gp120(223-231) 6891..6917 B human, mouse DR2, DR6, H-2d
NKTFNGKGPCTNVSTY gp160 230-245 gp120(230-245) 6912..6959   human  
GTGPCTNVSTVQC gp160 235-247 gp120(235-247) 6927..6965   macaque  
TNVSTVQCTHGRPIY gp160 240-255 gp120(240-255) 6942..6989   human  
GIRPIVSTQLLLNGSC gp160 250-265 gp120(250-265) 6972..7019   human  
RPVVSTQLLLNGSLA gp160 252-266 gp120(252-266) 6978..7022 B human  
PVVSTQLLLNGSLAE gp160 253-267 gp120(253-267) 6981..7025 B human  
EVVIRSANFTDNAKT gp160 269-283 gp120(269-283) 7029..7073   human  
VVIRSDNFTNNAKTIC gp160 270-285 gp120(270-285) 7032..7079   human  
IRSENITNNAKTIIV gp160 272-286 gp120(272-286) 7038..7082 A human  
SANFTDNAKTIIVQL gp160 274-288 gp120(274-288) 7044..7088   human  
NAKTIIVQLNESVAIC gp160 280-296 gp120(280-296) 7062..7112   human  
NESVAINCT gp160 289-297 gp120(289-297) 7089..7115   human  
SVVEINCTRPNNNTRKS gp160 290-306 gp120(290-306) 7092..7142 B human  
CTRPNNNTRKSI gp160 296-307 gp120(296-307) 7110..7145      
RPYNNTRKGI gp160 298-307 gp120(298-307) 7116..7145   mouse H-2 IAb
NTRKSIRIQRGPGR gp160 302-315 gp120(302-315) 7128..7169   mouse  
CKRKIHIGPGQAFYT gp160 303-319 gp120(303-319) 7131..7181 C mouse H-2b, H-2d, H-2k, H-2s
RIHIGPGRAFYTTK gp160 308-321 gp120(308-321) 7146..7187   mouse H-2d
RIQRGPGRAFVTIGK gp160 308-322 gp120(308-322) 7146..7190 B, C human, macaque, mouse DR, H-2 Ad, H-2 I-Ad
RIQRGPRAFVTIGK gp160 308-322 gp120(308-322) 7146..7190   mouse H-2d
RIHIGPGRAFYTTKN gp160 308-322 gp120(308-322) 7146..7190 B, C human  
EQRGPGRAFVTIGKI gp160 309-323 gp120(309-323) 7149..7193   human  
IQRGPGRAFVTIGKIGN gp160 309-325 gp120(309-325) 7149..7199   human  
RGPGRAFVT gp160 311-319 gp120(311-319) 7155..7181 B mouse  
RGPGPAFVTI gp160 311-320 gp120(311-320) 7155..7184   mouse H-2d
RGPGRAFVTIGK gp160 311-322 gp120(311-322) 7155..7190   mouse H-2d
GRAFVTIGKIGNMRQ gp160 314-328 gp120(314-328) 7164..7208   human  
RAYYTTNIVGNIRQ gp160 315-328 gp120(315-328) 7167..7208   mouse H-2 IAb
FVTIGKIGNMRQAHC gp160 317-331 gp120(317-331) 7173..7217   mouse H-2d, H-2k
TGDIIGDIRQAHCNI gp160 319-333 gp120(319-333) 7179..7223 C human  
GIIGDIRQAHCHVSR gp160 321-335 gp120(321-335) 7185..7229 A human  
RIIGDIRKAHCNISRY gp160 321-336 gp120(321-336) 7185..7232   human  
IVGNIRQAHCNVSKA gp160 322-336 gp120(322-336) 7188..7232   mouse H-2 IAb
IIGDIRQAHCNISRE gp160 322-336 gp120(322-336) 7188..7232 A, B, C, D mouse H-2 IAb
GNIRQAHCNVSKA gp160 324-336 gp120(324-336) 7194..7232   mouse H-2 IAb
GNIRQAHCNVSKAKW gp160 324-338 gp120(324-338) 7194..7238 B, D mouse H-2 IAb, H-2b
RQAHCNISRAKWNNT gp160 327-341 gp120(327-341) 7203..7247 B mouse I-Ad
CNISRAQWNNTLEQI gp160 331-345 gp120(331-345) 7215..7259   human  
RAKWNNTLKQIDSKL gp160 335-349 gp120(335-349) 7227..7271   mouse H-2b, H-2k, H-2s
RAKWNNTLKQICSKL gp160 335-349 gp120(335-349) 7227..7271   mouse H-2i5, H-2k, H-2t4
TLEQIVKKLREQFGNC gp160 341-356 gp120(341-356) 7245..7292   human  
QIVKKLREQFGNNK gp160 344-357 gp120(344-357) 7254..7295   human  
FGNNKTII gp160 353-360 gp120(353-360) 7281..7304   macaque  
QSSGGDPEIV gp160 363-372 gp120(363-372) 7311..7340 B human  
SSGGKPEIVTHSFNC gp160 364-378 gp120(364-378) 7314..7358   human  
PEIVTHSFNCGGEFF gp160 369-383 gp120(369-383) 7329..7373   human  
GEFFYCNSTQLFNS? gp160 380-393 gp120(380-393) 7362..7403 B human  
EFFYCNTTQLFNNTW gp160 381-395 gp120(381-395) 7365..7409   human  
TQLFNSTWFNSTWST gp160 388-402 gp120(388-402) 7386..7430 B human DP4
FNNTWRLNHTEGTKGC gp160 391-405 gp120(391-405) 7395..7439   human  
TWFNSTWSTKGSNNT gp160 394-408 gp120(394-408) 7404..7448   human  
TWSTKGSNNTEGSDT gp160 399-413 gp120(399-413) 7419..7463   human  
GSNNTVGNPIILPCRI gp160 404-420 gp120(404-420) 7434..7484 A, B, C, D human  
SNNTVGNPIILPCRI gp160 405-420 gp120(405-420) 7437..7484 B mouse H-2 IAb, H-2b
SSSIITIPCRIKQII gp160 410-424 gp120(410-424) 7452..7496 C human  
ITIPCRIKQIINMWQ gp160 414-428 gp120(414-428) 7464..7508 C human  
LPCRIKQIINMWQEVY gp160 416-431 gp120(416-431) 7470..7517   human  
CRIKQIINMWQEVGR gp160 418-432 gp120(418-432) 7476..7520 C human  
RIKQIINMWQKVGKA gp160 419-433 gp120(419-433) 7479..7523 B human  
KQIINMWQKVGQAMY gp160 421-435 gp120(421-435) 7485..7529 A human  
KQIINMWQEVGKAMYA gp160 421-436 gp120(421-436) 7485..7532 B, C chimpanzee, goat, human, mouse DR, DRB1*13, H-2d, H-2k, H-2s, H-2t4, H-2Eα Eβ k, H-2Ek
KQFINMWQEWGKAMYA gp160 421-436 gp120(421-436) 7485..7532   human  
FINMWQEVGKAMYAPPIS gp160 423-440 gp120(423-440) 7491..7544   human  
INMWQEVGKAMYAPP gp160 424-438 gp120(424-438) 7494..7538   human  
NMWQEVGKAMYAPPI gp160 425-439 gp120(425-439) 7497..7541   mouse H-2s, H-2t4
MWQEVGKAMYAPPIGC gp160 426-441 gp120(426-441) 7500..7547   human  
VGKAMYAPPISGQIR gp160 430-444 gp120(430-444) 7512..7556   mouse H-2b, H-2d, H-2i5, H-2k, H-2s, H-2t4
VGRAMYAPPIKGNIT gp160 430-444 gp120(430-444) 7512..7556 C human  
AMYAPPIAGLIQCSS gp160 433-447 gp120(433-447) 7521..7565 D mouse H-2 IAb, H-2b
MYAPPIKGNITCKSN gp160 434-448 gp120(434-448) 7524..7568 C human  
APPIGGQISCSSNITY gp160 436-451 gp120(436-451) 7530..7577   human  
PPISGQIRCS gp160 437-446 gp120(437-446) 7533..7562   human  
PIKGNITCKSNITGL gp160 438-452 gp120(438-452) 7536..7580 C human  
IGGQIRCSSN gp160 439-448 gp120(439-448) 7539..7568   human  
SSNITGLLLTRDGGTC gp160 446-461 gp120(446-461) 7560..7607   human  
RDGGTNVTNDTEVFRC gp160 456-470 gp120(456-470) 7590..7634   human  
GNSNNESEIFRPGGG gp160 459-473 gp120(459-473) 7599..7643   human  
ETFRPGGGDMRNNWR gp160 466-480 gp120(466-480) 7620..7664 C human  
FRPGGGDMRDNWRSEL gp160 468-483 gp120(468-483) 7626..7673   human  
DMRDNWRSELYKYKV gp160 474-488 gp120(474-488) 7644..7688   human  
RDNWRSELYKYKVVK gp160 476-490 gp120(476-490) 7650..7694   mouse H-2d, H-2k, H-2s, H-2t4
ELYKYKVVEIKPLGV gp160 482-496 gp120(482-496) 7668..7712 C human  
YKYKVVKIEPLGV gp160 484-496 gp120(484-496) 7674..7712 B macaque DR*W201
YKYKVVKIEPLGVAP gp160 484-498 gp120(484-498) 7674..7718   human  
CKYKVVKIEPLGVAPT gp160 484-499 gp120(484-499) 7674..7721   mouse H-2d, H-2i5, H-2k, H-2t4
KYKVVKIEPLGVAPT gp160 485-499 gp120(485-499) 7677..7721   mouse H-2b, H-2d, H-2k, H-2s
KYKVIKIEPLGIAPTC gp160 485-500 gp120(485-500) 7677..7724   human  
YKVVKIEPL gp160 486-494 gp120(486-494) 7680..7706   macaque DRB*W201
YKVVEIKPLGVAPTT gp160 486-500 gp120(486-500) 7680..7724 C human  
TKAKRRVVEREKR gp160 499-511 gp120(499-511) 7719..7757   human DR
GIVQQQNNLLRAIEA gp160 547-561 gp41(36-50) 7863..7907   human  
QQHLLQLTVWGIKQL gp160 562-576 gp41(51-65) 7908..7952 B human  
LTVWGIKQLQARVLA gp160 568-582 gp41(57-71) 7926..7970 A human  
GIKQLQARVLAVERY gp160 572-586 gp41(61-75) 7938..7982 B human  
GIKQLQARVLAVERYLK gp160 572-588 gp41(61-77) 7938..7988 B human  
LQARILAVERYLKDQQ gp160 576-591 gp41(65-80) 7950..7997   mouse H-2b, H-2d
YLRDQQLLGIWG gp160 586-597 gp41(75-86) 7980..8015   chimpanzee, human  
YLRDQQLLGIWGC gp160 586-598 gp41(75-87) 7980..8018   macaque, mouse  
LKDQQLLGLWGCSGKLI gp160 587-603 gp41(76-92) 7983..8033 C baboon  
LGLWGCSGKLIC gp160 593-604 gp41(82-93) 8001..8036   mouse H-2d
LGIWGCSGKLIC gp160 593-604 gp41(82-93) 8001..8036 B, BF, C human  
GIWGCSGKLI gp160 594-603 gp41(83-92) 8004..8033 B, BF, C human  
GIWGCSGKLIC gp160 594-604 gp41(83-93) 8004..8036 B, BF, C human  
CSGKLICTTAVP gp160 598-609 gp41(87-98) 8016..8051 B human  
CTTAVPWNASWS gp160 604-615 gp41(93-104) 8034..8069 B human  
TNVPWNASWSNKSLE gp160 606-620 gp41(95-109) 8040..8084 B mouse H-2 IAb
PWNASWSN gp160 609-616 gp41(98-105) 8049..8072   human  
NASWSNKSLE gp160 611-620 gp41(100-109) 8055..8084   mouse H-2 IAb
WSNKSLEDIWDNMTWC gp160 614-629 gp41(103-118) 8064..8111   human  
EQIWNHTTWMEWDRE gp160 620-634 gp41(109-123) 8082..8126 B human DP4
EIDNYTNTIYTLLEEC gp160 634-649 gp41(123-138) 8124..8171   human  
EESQNQQEKNEQELL gp160 647-661 gp41(136-150) 8163..8207   human  
QNQQEKNEQELLE gp160 650-662 gp41(139-151) 8172..8210 B human  
LELDKWASLWNWFNITNW gp160 661-678 gp41(150-167) 8205..8258 B human  
ASLWNWFNITNWLWY gp160 667-681 gp41(156-170) 8223..8267   human  
IKLFIMIVGGLVGLR gp160 682-696 gp41(171-185) 8268..8312   human  
FVVLSIVNRVRQGYS gp160 683-697 gp41(172-186) 8271..8315 B human  
RTFIMIVGGLIGLRI gp160 683-697 gp41(172-186) 8271..8315 B human  
AVLSIVNRVRQGYSPLSF gp160 700-717 gp41(189-206) 8322..8375 B human  
GIEEEGGERDRDR gp160 732-744 gp41(221-233) 8418..8456 B human  
RIVELLGRRGWEALK gp160 780-794 gp41(269-283) 8562..8606   mouse H-2d, H-2k, H-2s, H-2t4
KYWWNLLQYWSQELK gp160 794-808 gp41(283-297) 8604..8648   mouse H-2d, H-2k, H-2s
LLQYWSQELKNSAVS gp160 799-813 gp41(288-302) 8619..8663   mouse H-2d, H-2k, H-2s, H-2t4
WLNATAIAVTEGTDRC gp160 814-829 gp41(303-318) 8664..8711   human  
AVAEGTDRVIEVVQG gp160 821-835 gp41(310-324) 8685..8729   mouse H-2b, H-2k, H-2s
YVAEGTDRVIEVVQGACR gp160 821-838 gp41(310-327) 8685..8738   human  
DRVIEVVQG gp160 827-835 gp41(316-324) 8703..8729   mouse H-2k
DRVIEVVQGAYRAIR gp160 827-841 gp41(316-330) 8703..8747 B human, macaque, mouse H-2b, H-2i5, H-2k
DRVIEVVGQAYRAIR gp160 827-841 gp41(316-330) 8703..8747 C human  
VIEVVQGAYRAIRHI gp160 829-843 gp41(318-332) 8709..8753   mouse H-2b, H-2k
QGAYRAIR gp160 834-841 gp41(323-330) 8724..8747   mouse H-2i5
QGAYRAIRHIPRRIR gp160 834-848 gp41(323-337) 8724..8768   mouse H-2b, H-2d, H-2i5, H-2k, H-2s, H-2t4
AIRHIPRRIR gp160 839-848 gp41(328-337) 8739..8768   mouse H-2d, H-2t4
AIRHIPRRIRQGLER gp160 839-853 gp41(328-342) 8739..8783   human, mouse H-2b, H-2d, H-2k, H-2s, H-2t4
HIPRRIRQGLERILL gp160 842-856 gp41(331-345) 8748..8792   human  
GKWSKSSIVGWSAVR Nef 3-17   8803..8847 B human  
KWSKNRIVGWPAVRE Nef 4-18   8806..8850 B human  
RSVVGWPAVRERMRRA Nef 8-23   8818..8865 B human  
SAIRERMRR Nef 14-22   8836..8862 B human DRw6
PAVRERMRRAEPAADGV Nef 14-30   8836..8886 B human  
RRAEPAADGVGAVSRDL Nef 21-37   8857..8907 B human  
LEKHGAITSSNTAAT Nef 37-51   8905..8949   human  
ITSSNTA Nef 43-49   8923..8943 B human DQw7
SSNTAATNAACAWLE Nef 45-59   8929..8973   human  
AWLEAQEEEEVGF Nef 56-68   8962..9000   human, mouse, transgenic mouse DQ, DQ2, DQ3, DQ5, DQ6, DQ7, DQ8
EEVGFPVRPQ Nef 64-73   8986..9015 B human DRw15(2)
EVGFPVIPQVPLRPM Nef 65-79   8989..9033   human  
VGFPVRPQ Nef 66-73   8992..9015 B human DR1, DRw15(2)
FPVRPQVPLRPMTYR Nef 68-82   8998..9042 B human  
QVPLRPMTYKGALDL Nef 73-87   9013..9057 B human  
QVPLRPMTYKAAVDLSHF Nef 73-90   9013..9066 B human  
YKAAVDLSHFLKEKGGL Nef 81-97   9037..9087 B human  
FKGAFDLSFFLKEKGGL Nef 81-97   9037..9087 C human  
AVDLSHFLKEKGGLM Nef 84-98   9046..9090 B human  
SWFLKEKGGLEGLIY Nef 88-102   9058..9102 B human  
GWFLKEKGGLDGLIY Nef 88-102   9058..9102 B human  
EGLIHSQRRQDILDL Nef 98-112   9088..9132   chimpanzee  
QKRQDILDLWVYHTQGYF Nef 104-121   9106..9159 B human  
LWVYHTQGYFPDWQNY Nef 112-127   9130..9177 B human  
LWVYHTGQGYFPDWQNYT Nef 112-128   9130..9180 B human  
GWPFKLVPVDPREVQ Nef 140-154   9214..9258 B human  
GWCFKLVPVEPEEVE Nef 140-154   9214..9258 B human  
GWCFKLVPVDPDEVE Nef 140-154   9214..9258 B human  
NSLLHPMSLHGMDDPEK Nef 162-178   9280..9330 B human  
PEKEVLVWKFDSRLAFHH Nef 176-193   9322..9375 B human DRB1*0101, DRB1*0401, DRB1*0701, DRB1*1101, DRB1*1302, DRB1*1501, DRB5*0101
EVLMWKFDSRLAFHH Nef 179-193   9331..9375 B human  
EVLMWKFDSRLALTH Nef 179-193   9331..9375 B human  
EVLVWRFDSRLAFHH Nef 179-193   9331..9375 B human  
LVWRFDSK Nef 181-188   9337..9360 B human DP5
RWEFDSSLARRHLAR Nef 182-196   9340..9384 B human  
KFDSRLAFHHMARELH Nef 184-199   9346..9393 B human DRB1*0101, DRB1*0701, DRB1*1101, DRB1*1501, DRB5*0101
FDSRLAFHHVARELHP Nef 185-200   9349..9396   human  
LAFHHVARELHPEYF Nef 189-203   9361..9405   human  
AFHHMARELHPEYYKDC Nef 190-206   9364..9414 B human  
FHHMARELH Nef 191-199   9367..9393 B human DR1
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