HIV molecular immunology database

CTL/CD8+ Epitope Summary

Download CTL/CD8+ epitope summary.

This is a list of all HIV CTL/CD8+ epitopes mapped to within a region of 21 amino acids or less. The protein, HXB2 location, host species, and HLA restriction elements are provided. Identical sequences are shown only once. The epitope sequence is a link to the database that will provide details of all epitopes containing that sequence. There is also a separate summary table for a set of the best-defined HIV CTL/CD8+ epitopes.

Epitope Protein HXB2 Location Subtype Species HLA
MGARASVLSG p17 1-10 CRF01_AE human A11.1
ASVLSGGEL p17 5-13 B human  
ASILRGGKLDK p17 5-15 C human  
SVLSGGQLDR p17 6-15 B human A11
LSGGELDRWEK p17 8-18 macaque  
GELDRWEKI p17 11-19 B human B*4002, B40
ELDRWEKIRL p17 12-21 B, C human B63
KIRLRPGGK p17 18-26 A, B, CRF01_AE human, transgenic mouse A*0301, A03, A11, A3, B27, B7
KIRLRPGGKK p17 18-27 B, C, multiple human A*0301, A11, A3, B27
KIRLRPGGKKKYKL p17 18-31 human A3, B62
IRLRPGGKK p17 19-27 B human, scid-hu mouse B*2705, B27, B2705
IRLRPGGKKK p17 19-28 multiple human A11, A3, B62
RLRPGGKKK p17 20-28 A, B, CRF02_AG, multiple human A*0301, A03, A11, A3, A30, A31, A68, B42, B62
RPRPGGKKK p17 20-28 human A3
RLRPGGKKKY p17 20-29 B human A*0301, A3, A30, B42, B62
RLRPGGKKHY p17 20-29 C human A*3002
RLRPGGKKKYK p17 20-30 human  
RLRPGGKKHYM p17 20-30 C human  
RPGGKKHY p17 22-29 A, C, D human B42, B7
RPGGKKRYM p17 22-30 C human B35, Cw*0602
RPGGKKKYML p17 22-31 A, C, D human B*0702, B*5801, B*8101
RPGGKKRYKL p17 22-31 human B7
RPGGKKKYKL p17 22-31 B, D human Cw4
GGKKKYKL p17 24-31 A, B, CRF02_AG, D human B*0801, B8
GGKKKYRL p17 24-31 human B*0801, B8
GGKKKYKLK p17 24-32 B human B*0801, B8
GGKKKYKLKHIV p17 24-35 human B8
KRYMIKHLV p17 27-35 C human Cw*0602
HYMLKHIVW p17 28-36 A, C human A*2301
HYMLKHLVW p17 28-36 C human A*2301, A*2402
KYKLKHIVW p17 28-36 B, CRF01_AE human A*2402, A23, A24
HYMLNHIVW p17 28-36 A, C, D human B*0702, B*5801, B*8101
KYRLKHLVW p17 28-36 A human Cw4
HYMLKHLVWAS p17 28-38 C human  
HLVWASREL p17 33-41 C human Cw*0602, Cw*0804
IVWASRELER p17 34-43 B human A11
LVWASRELERF p17 34-44 C human A*3002, B*5703, B57
LVWRELERF p17 34-44 human A30
WASRELERF p17 36-44 B, C human B*3501, B35, Cw*0602
RFAVNPGLL p17 43-51 B, C human B63
GLLESSEGC p17 49-57 B human A2
QILEQLQPA p17 59-67 B human A2
QILEQLQPAL p17 59-68 B human A2
QLQPSLQTGS p17 63-72 B human  
GSEELRSLY p17 71-79 B human A*01, A*0101, A1
GTEELRSLY p17 71-79 A human A*0101
EELRSLYNTV p17 73-82 C human B*4006
ELRSLYNTV p17 74-82 B, CRF01_AE human B*0801, B8
ELRSLYNTVA p17 74-83 multiple human A2
RSLYNTVATLY p17 76-86 B, C human A*30, A*3002, A30, B57, B58, B63
RLSYNTVATLY p17 76-86 human A*3002
RSLYNTATLY p17 76-86 human A30
KSLYNTVCV p17 76-88 mouse H2-Db
SLYNTVATL p17 77-85 A, B, C, CRF02_AG, D human, mouse, transgenic mouse A*02 and B*1503, A*0201, A*0202, A*0205, A*0214, A*68, A02, A2
SLFNTVATL p17 77-85 A, B human A*0201, A2
SLYNTIATL p17 77-85 B, CRF01_AE human A*0201, A2
SLYNTAVTL p17 77-85 human A2
SLYNTVAVL p17 77-85 B human A2
SLYNTVATLY p17 77-86 B, multiple human A2
SLFNTVATLY p17 77-86 C human  
LYNTVATL p17 78-85 D human A24, C14, Cw14
LYNTVATLY p17 78-86 C human A*2902, A29, B*4403
LFNTVATLY p17 78-86 C human A*2902
NTVATLYCV p17 80-88 human, transgenic mouse A2
IATLWCVHQR p17 82-91 CRF01_AE human A11
ATLYCVHQR p17 83-91 B human  
AVLYCVHQR p17 83-91 B human A11
TLYCVHQK p17 84-91 human A*1101
TLYCVHQR p17 84-91 B human A*1101, A11
TLYCVHQKI p17 84-92 B human A*1103
TLYCVHQRI p17 84-92 human A11
VLYCVHQRI p17 84-92 B human A2
LYCVHQKI p17 85-92 D human A24
YCVHAGIEVRD p17 86-96 C human  
CVHQRIEIK p17 87-95 B human A11
HQRIEIKDTK p17 89-98 B human A11
RIDVKDTKEAL p17 91-101 human  
IEIKDTKEAL p17 92-101 B human B*4001, B40, B60, B61
IDIKDTKEAL p17 92-101 human B*4001
EIKDTKEAL p17 93-101 B, CRF01_AE human B60, B8
EVKDTKEAL p17 93-101 B human B*0801, B8
DVKDTKEAL p17 93-101 human  
KIEEEQNKSK p17 103-112 B human A11
AADTGNSSQ p17 119-127 B human  
DTGHSNQVSQNY p17 121-132 B human A33
GNSSQVSQNY p17 123-132 B human  
NSSKVSQNY p17 124-132 B human B*3501, B35
NSSQVSQNY p17 124-132 human B*3501
PPSGKGGNY p17 124-132 HIV-2 human  
NSSQVSQNYP p17-p24 124-1 B human  
GKKVSQNYPIV p17-p24 125-3 C human  
QVSQNYPIV p17-p24 127-3 B, D human A*6802, A68
SQNYPIVQNIQ p17-p24 129-7 macaque  
NYPIVQNL p17-p24 131-6 human A*2402
VQNLQGQMV p24 3-11 B, C human B13
GQMVHQAISP p24 8-17 A, C, D human B*5802, B57
GQMVHQAISPRTL p24 8-20 human Cw3
GQMVHQAISPRTLN p24 8-21 B, CRF01_AE human  
QMVHQAISPR p24 9-18 human A3 supertype
MVHQAISPR p24 10-18 human A3 supertype
VHQAISPRTL p24 11-20 C human B*1510
VQHAISPRTLNAWV p24 11-24 human  
HQAISPRTL p24 12-20 chimpanzee, human B*1510, Patr-B2
QAISPRTL p24 13-20 human Cw3
QAISPRTLNAW p24 13-23 B human A*2501, A25
QAISPRTLNAV p24 13-23 human A25
AISPRTLNAW p24 14-23 B, C human B57, B63
ISPRTLNAW p24 15-23 A, B, C, D human A*310102, A*6603, B*440302, B*5701, B*5703, B*58, B*5801, B57, B58, B63, C*07 and C*040101, Cw*0602
LSPRTLNAW p24 15-23 A, C human B*5703, B*5801, B57, B58
SPRTLNAWV p24 16-24 B chimpanzee, human B*0702, B*8101, B07, B7
RTLNAWVKV p24 18-26 human, transgenic mouse A2
TLNAWVKW p24 19-26 transgenic mouse A*0201
TLNAWVKVV p24 19-27 B human A*0202, A2
TLNAWVKVI p24 19-27 B human, transgenic mouse A*0201, A2
NAWVKIEEK p24 21-30 B human  
NAWVKVVEEKA p24 21-31 macaque  
VKVIEEKAF p24 24-32 C human B*1503
VKVVEEKAF p24 24-32 B, C human B*1503
IEEKAFSPEV p24 27-36 C human B*4006
IEEKAFSPEVI p24 27-37 C human B*4501
EEKAFSPEV p24 28-36 A, C human B*4415, B*4501
EKAFSPEV p24 29-36 C human Cw*0602
EKAFSPEVIPM p24 29-39 macaque  
KAFSPEVI p24 30-37 B human B*5703, B57
KAFSPEVIPMF p24 30-40 A, B, C, CRF02_AG, G human A*310102, A*6603, B*440302, B*5701, B*5701 and B*5703, B*5701/03, B*5703, B*5801, B57, B58, B63, C*07 and C*040101
KGFNPEVIPMF p24 30-40 human B*5701
AFSPEVIPMFT p24 31-41 C human  
AFSPEVIPMFSALS p24 31-44 B human  
FSPEVIPMF p24 32-40 B, C human B57, B58, B63
SPEVIPMF p24 33-40 C human B35
EVIPMFSAL p24 35-43 A, B, C, CRF01_AE, D human A*2601, A*2603, A26
EVIPMFTAL p24 35-43 C human A*2601
VIPMFSAL p24 36-43 B human Cw*0102, Cw1, Cw2
PMFTALSEGAT p24 38-48 C human  
ALSEGATPQDL p24 42-52 C human  
LSEGATPQDL p24 43-52 A, B human B*4403, B42, B44
SEGATPQDL p24 44-52 B, CRF02_AG human B*4001, B40, B44, B60, B61
GATPQDLNTMLNTV p24 46-59 human  
ATPQDLNTM p24 47-55 human B7
ATPQDLNMML p24 47-56 A human B53
CTPYDINQMLNC p24 47-58 HIV-2 human B58
ATPQDLNTMLNT p24 47-58 B, D human B58
TPQDLNTM p24 48-55 human B7
TPQDLNTML p24 48-56 A, B, C, D human B*0702, B*3910, B*4201, B*5301, B*8101, B*b101, B07, B39, B42, B53, B7, B81, Cw*0802, Cw8
TPQDLNMML p24 48-56 A human B*4202, B*53C1, B53
TPYDINQML p24 48-56 HIV-2 human B*5301, B53
TPQDLNQML p24 48-56 human B53
TPQDLNTML ? p24 48-56 human B81
TPQDLNMMLN p24 48-57 multiple human B7
TPQDLNTMLN p24 48-57 multiple human B14, B7
TPQDLNQMLNTV p24 48-59 B, G human B58
PQDLNTMLN p24 49-57 B human B14, Cw8
DLNMMLNIV p24 51-59 A human B14
DLNTMLNTV p24 51-59 B chimpanzee, human B*1402, B14, Cw8
DLNTMLNTVG p24 51-60 multiple human A2, B14
NTMLNTVGGHQAAM p24 53-66 C human  
GGHQAAMQMLK p24 60-70 C human  
GHQAAMQML p24 61-69 B, C human B*1510, B*3901, B38, B39
GHQAAMQMLKE p24 61-71 B human A2
HQAAMQMLK p24 62-70 B human A11, B52
AMQMLKET p24 65-72 mouse H-2d
AMQMLKETI p24 65-73 A, B, CRF02_AG human, mouse A2, H-2d, H-2kd, H-2Dd, H-2Kd, H-2d
ANQMLKDTI p24 65-73 C mouse H-2d
AMQMLKDTI p24 65-73 C mouse H-2d
AMQMLKETI? p24 65-73 mouse  
KETINEEAA p24 70-78 B human B*4002
ETINEEAAEW p24 71-80 A, B, D human A*2501, A25, B*5301, B53, B58
DTINEEAAEW p24 71-80 A, B, C human B*5301, B*5801, B53
EEAAEWDRV p24 75-83 B human B40
AAEWDRLHPVH p24 77-87 C human  
AEWDRLHPV p24 78-86 B, C human A2, B*4006
AEWDRVHPV p24 78-86 B human B*4002, B40
DRVHPVHAGPI p24 81-91 macaque  
RLHPVHAGPIA p24 82-92 C human  
LHPVHAGPI p24 83-91 B human  
VHPVHAGPIA p24 83-92 human B55
HPVHAGPI p24 84-91 D human B35
HPVHAGPIA p24 84-92 B, C human B*3910, B07, B35, B7
HPVHAGPVA p24 84-92 B human B7
GPIAPGQM p24 89-96 C, D human B35
GQMREPRGSDI p24 94-104 B, C human B13
GQMREPRGSDIA p24 94-105 C human  
TTSTLQEQI p24 107-115 mouse H-2Kd
TSTLQEQIGW p24 108-117 B, C, HIV-2 human A*310102, A*6603, B*440302, B*5701, B*5703, B*58, B*5801, B27, B35, B57, B58, B63, B7, C*07 and C*040101
TSTLQEQIGN p24 108-117 B human B*5701
TSTLQEQIAW p24 108-117 B, C human B*5701, B*5703, B*5801, B57
TSTVEEQQIW p24 108-117 HIV-2 human B*5801, B58
TSTVEEQIQW p24 108-117 HIV-2 human B*5801
TSTLQRQIGW p24 108-117 human  
TSNLQEQIGW p24 108-117 B human  
TSTLQEQIGWF p24 108-118 B human B*5801, B57
STLQEQIGW p24 109-117 B, D human B*5701, B*5801, B57, B58
STLQEQIGWM p24 109-118 B human  
TLQEQIGWM p24 110-118 human A2
NLQEQIGWM p24 110-118 B human A2
NLQEQIGWMT p24 110-119 B human A2
WMTNNPPIPV p24 117-126 B human A2
MTNNPPIPV p24 118-126 B human A2, A2 supertype
MTSNPPIPV p24 118-126 M human, mouse A*0201
PPIPVGDIY p24 122-130 B, C human B*3501, B*3501 and B*3502, B35
PPVPVGDIY p24 122-130 C human B35
NPVPVGNIY p24 122-130 HIV-2 human B*3501
PPIPVGEIY p24 122-130 A, B, C, D human B35, B53, B7 supertype
PPIPVGDIH p24 122-130 human  
PVGDIYKRWII p24 125-135 C human  
VGEIYKRWIIGLNK p24 126-140 B human  
GDIYKRWII p24 127-135 human B*0801
GEIYKRWII p24 127-135 A, B, C, CRF02_AG, D human B*0801, B8
GEIYKRWIIL p24 127-136 B human B*0801
EIYKRWII p24 128-135 B human B*0801, B8
DIYKRWII p24 128-135 B, C human B*0801, B8
EIYRKWII p24 128-135 human B8
EIYKRWII ? p24 128-135 human B8
EIYKRWIIL p24 128-136 B, D human A*2402, A2, A24
IYKRWIIL p24 129-136 human A*2402
IYKRWIILGL p24 129-138 B, D human A*2402, A24, B27
KRWIILGLN p24 131-139 chimpanzee Patr-B3
KRWIILGLNK p24 131-140 A, B, C, CRF01_AE, CRF02_AG, D human, mouse B*2705, B27, B2705, B35, B57
RRWIQLGLQK p24 131-140 human B*2703, B27
KRWIILGGLNK p24 131-140 human B*2705
KRWIIMGLNK p24 131-140 B human B*2705, B27
KRWIIMGNK p24 131-140 human B27
KRWIILGNK p24 131-140 human B27
KRWIIMGLHK p24 131-140 B human B27
KRWILLGLNK p24 131-140 B human  
KRWIILGLNKIV p24 131-142 B human B27
KRWILGLNKIV p24 131-142 human B27
KRWILGLNKIVRMY p24 131-145 human  
RWIILGLNK p24 132-140 B human B27
KWILGLNKIVRMY p24 132-145 human B27
IILGLNKIV p24 134-142 B human A2
IILGLNKIVR p24 134-143 B human A11, A3, A33
ILGLNKIV p24 135-142 B, C, CRF01_AE human A*0201, A2, A3
ILGLNKIVR p24 135-143 B human A11, A3
ILGLNKIVRMY p24 135-145 B human B7 supertype
LGLNKIVRMY p24 136-145 B human B62
LGLNKIVRMYS p24 136-146 C human B62
GLNKIVRMY p24 137-145 B human B*15, B*1501, B*62, B15, B1501, B27, B62
GLNKVRMY p24 137-145 B, CRF01_AE human B62
VRMYSPVSI p24 142-150 C human Cw*1801, Cw18
RMYSPTSI p24 143-150 B human B*5201, B52
RMYSPVSIL p24 143-151 C human A*0201
RMYSPTSIL p24 143-151 B, CRF01_AE, CRF02_AG human A2
MYSPTSIL p24 144-151 B human A24
SILDIRQGPK p24 149-158 B human A11
DIRQGPKEPFR p24 152-162 B human  
EPFRDYVDRF p24 159-168 B, C human, mouse A*0201, H-2d, H-2Ld
EPFRDYVDRFF p24 159-169 A, C, D human B81
PFRDYVDRFF p24 160-169 C human  
FRDYVDRFF p24 161-169 C human Cw*1801, Cw18
FRDYVDRFYK p24 161-170 B, D human, macaque B*1801, B18, B27
FRDYVDRFFK p24 161-170 human  
FRDYVDRFYKTLRA p24 161-174 B human  
RDYVDRFFKTL p24 162-172 A human A*2402, A24
RDYVDRFYKTL p24 162-172 B, D human, macaque A26, B*4402, B44, B70
DYVDRFYKT p24 163-171 B human A*2402
DYVDRFYKTL p24 163-172 human A24
YVDRFYKTL p24 164-172 B human A*0207, A2, B70
YVDRFFKTL p24 164-172 A, C, D human A*2601, A26, B*1503, B*1510, B15, B70, Cw*0303, Cw*0304
YVDRFFKRL p24 164-172 human B*1510, B70
YVDRFFKTL ? p24 164-172 human Cw0304
VDRFYKLTRAEQAS p24 165-178 B human A*33 motif
VDRFYKTLRAEQAS p24 165-178 B human  
DRFYKLTRA p24 166-174 B human B14
DRFFKTLRA p24 166-174 C human B*1401, B*1402, B*1403, B14
DRFYKTLRA p24 166-174 B, D human B*1402, B14
DRFWKTLRA p24 166-174 human B14
DRFYKTLRAE p24 166-175 human B14
DRFYKTRAE p24 166-175 human B14
DRFYKTLRAEQ p24 166-176 B human B*1402
TLRAEQATQD p24 171-180 C human Cw*0304
RAEQASQEV p24 173-181 B human Cw*0802, Cw08, Cw8
RAEQASQEVK p24 173-182 B human A11
RAEQATQDVKN p24 173-183 C human  
AEQASQDVKNW p24 174-184 B, D human B*4402, B44
AEQASQEVKNW p24 174-184 B human B44
AEQASADVKNW p24 174-184 B human B44
AEQASQEVKNWM p24 174-185 human Cw5
EQASQEVKNWMT p24 175-186 human B44
QASQEVKNW p24 176-184 B, D human B*5301, B*5701, B*5801, B53, B57, B58, Cw04, Cw4
QATQDVKNW p24 176-184 C human B*5301, B*5801, B57
QATQEVKNW p24 176-184 human B53
QATQEVKNM p24 176-184 A human B53
QASGEVKNW p24 176-184 human Cw4
QASKEVKNWV p24 176-185 human B57
ATQEVKNWM p24 177-185 human B53
AAVKNWMTQTL p24 179-189 mouse H2-Db
EVKNWMTETL p24 180-189 human B53
VKNWMTETLL p24 181-190 B human B8
VKNWMTETLLV p24 181-191 B human B*27 motif
LVQNSNPDCK p24 190-199 B human A11
VQNSNPDCK p24 191-199 B human A11
NANPDCKTI p24 193-201 human B*5101, B51, B8
NANPDCKTI? p24 193-201 human B51
NANPDSKTI p24 193-201 human B51
ANPDCKTIL p24 194-202 human B7
NPDCKTIL p24 195-202 B, C human B*0801, B35
NPDCKTILRAL p24 195-205 C human B*3910
PDCKTILKA p24 196-204 B human  
DCKTILKAL p24 197-205 B human, humanized rabbit B*0801, B8
KALGPAATL p24 203-211 B human  
ALGPGASLEEM p24 204-214 C human  
GPGATLEEM p24 206-214 A, C, D human B*0702, B*5801, B*8101
ATLEEMMTA p24 209-217 CRF01_AE human, transgenic mouse A*0206, A2
EEMMTACQGVG p24 212-222 C human  
EMMTACQGV p24 213-221 human, transgenic mouse A*0201, A2
ACQGVGGPGHK p24 217-227 B, CRF01_AE human A*11, A*1101, A*1103, A11
CQGVGGPGHK p24 218-227 B human A11
GVGGPGHK p24 220-227 human A11
GVGGPGHKAR p24 220-229 B human A11
VGGPGHKARVL p24 221-231 B human B7
GPGHKARVL p24 223-231 B, C, D human B*0702, B*4201, B07, B35, B44, B7, B7 and B7 and B7
GPSHKARVL p24 223-231 A, C, D human B*0702, B42, B7, B81
GPGHKARVLA p24-p2p7p1p6 223-1 multiple human B7
RVLAEAMSQV p24-p2p7p1p6 229-7 B human A2
VLAEAMSQV p24-p2p7p1p6 230-7 B human, transgenic mouse A*0201, A2, A2 supertype
VLAEAMSQVT p24-p2p7p1p6 230-8 B human A2
AEAMSQVTNS p2p7p1p6 1-10 human B*4002, B*4501
SQVTNSATI p2p7p1p6 5-13 B human  
SQVTNPANI p2p7p1p6 5-13 mouse H-2Db
TNSANIMMQR p2p7p1p6 8-17 B human  
KGPRRIVKC p2p7p1p6 21-29 C mouse H-2d
KGPKRIIKC p2p7p1p6 21-29 C mouse H-2d
SKRIVKCFNCG p2p7p1p6 23-33 C human  
KTVKCFNCGR p2p7p1p6 25-34 B human A11
LARNCRAPRK p2p7p1p6 38-47 multiple human A*3101, A3
IAKNCRAPRKK p2p7p1p6 38-48 C human  
CRAPRKKGC p2p7p1p6 42-50 B human B14
KAPRKKGCWK p2p7p1p6 43-52 B human A11
KCGKEGHQMK p2p7p1p6 52-61 B human A11
HQMKDCNERQAN p2p7p1p6 58-69 B, G human A2
DCTERQANFLG p2p7p1p6 62-72 C human  
CTERQANFL p2p7p1p6 63-71 B human B*61, B61
TERQANFL p2p7p1p6 64-71 B human B*4002
ERQANFLGKIW p2p7p1p6 65-75 C human  
RQANFLGKI p2p7p1p6 66-74 B, C human B13
FLGKIWPS p2p7p1p6 70-77 B human, transgenic mouse A2
FLGKIWPSHK p2p7p1p6 70-79 B, C human A*0201, A*0205, A2
FLGKIWPSYK p2p7p1p6 70-79 B goat, human A*0201, A02, A2
KIWPSYKGR p2p7p1p6 73-81 human A*3101
GNFLQSRPTAPPF p2p7p1p6 83-97 human A2
FLQSRPEPTA p2p7p1p6 85-94 B human A2
EPTAPPEESF p2p7p1p6 91-100 D human B35, B58
TPSQKQEPI p2p7p1p6 108-116 D human B35, B53
SQKQEQIDK p2p7p1p6 110-118 B human A11
QEPIDKELY p2p7p1p6 113-121 D human B44
EPKDREPL p2p7p1p6 114-123 C human B*0801
EPIDKELYPL p2p7p1p6 114-123 D human B35, B53
KELYPLTSL p2p7p1p6 118-126 B human B*4001, B40, B60
LYPLASLRSL p2p7p1p6 120-129 D human A24
YPLASLRSL p2p7p1p6 121-129 B, D human B53, B7
YPLASLRSLF p2p7p1p6 121-130 D human B35
YPLTSLRSLF p2p7p1p6 121-130 B human B7
PLTSLKSLFGS p2p7p1p6 122-132 C human  
LASLRSLF p2p7p1p6 123-130 D human B58
NSPTRREL Gag_Pol_TF 24-31 B human Cw*0102
AGAERQGTL Gag_Pol_TF 44-52 C mouse H-2d
FSFPQITLW Gag_Pol_TF-Protease 54-6 B human  
ITLWQRPLV Protease 3-11 A, B, C, D human, transgenic mouse A*6802, A*7401, A19, A2, A28, A28 supertype, A74
QRPLVTIKI Protease 7-15 human A*0101
QRPLVTVKIG Protease 7-16 human B51
VTILIGGQLK Protease 11-20 human A3 supertype
TIKIGGQLK Protease 12-20 human A3 supertype
LLDTGADDTV Protease 23-32 transgenic mouse A*0201
LLDTGADDTVL Protease 23-33 human A3
DTVLEEMNL Protease 30-38 B human A*6802, A28, A68
DTVLEDINL Protease 30-38 A human A*6802
DTVLEEWNL Protease 30-38 D human A*6802
EEINLPGKW Protease 34-42 C human B44
EEMNLPGRW Protease 34-42 multiple human B*4402, B*4403, B18, B40, B44
LPGRWKPKMI Protease 38-47 human Cw3
WKPKMIGGI Protease 42-50 human B62, Cw3
KMIGGIGGF Protease 45-53 human B62
KMIGGIGGFI Protease 45-54 B human, humanized mouse A*0201, A2, A2 supertype, B62
KVRQYDQIL Protease 55-63 human A2, Cw6
VRQYDQIPIEI Protease 56-66 human B13
RQYDQILIEI Protease 57-66 B human B13
RQYDQIPIEI Protease 57-66 human B13
QYDQIPIEI Protease 58-66 human Cw*0401
ILIEICGHK Protease 62-70 human A3
IEICGHKAIG Protease 64-73 human B18, B40, B44
GKKAIGTVL Protease 68-76 C human B*1503
KAIGTVLV Protease 70-77 B, C human B57, B58, B63
VLVGPTPVNI Protease 75-84 B human, humanized mouse, transgenic mouse A*0201
LVGPTPVNI Protease 76-84 B human A*0201, A02, A2, A2 supertype
LVGPTPANI Protease 76-84 human, macaque A*0205
LVGPTPVNII Protease 76-85 C human A*0205
IGPTPVNII Protease 77-85 C mouse H-2d
PTPVNIIGRNL Protease 79-89 B, C human B63
TPVNIIGRNML Protease 80-90 C human B*8101, B81
TQIGCTLNF Protease 91-99 B, C, CRF01_AE human B*1501, B*1503
TQICGTLNF Protease 91-99 human B62, Cw3
CTLNFPISPI Protease-RT 95-5 human A2 supertype
TLNFPISPI Protease-RT 96-5 human A2 supertype
SPIETVPVKL RT 3-12 B, C, multiple human A2, B*8101, B61, B7, B8
IETVPVKL RT 5-12 human B*4001, B40
PGMDGPKVKQ RT 14-23 multiple human A11
GPKVKQWPL RT 18-26 A, B, C, D human B*0801, B8
GPKVKQWPLT RT 18-27 multiple human B7, B8
ALVEICTEM RT 33-41 B human, humanized mouse, transgenic mouse A*0201, A2, A3
ALVEICTEL RT 33-41 B human A*0201
ALVEICTEMEK RT 33-43 human A*0301, A3
ALVICTEMEK RT 33-43 human A3
TEMEKEGKI RT 39-47 mouse H-2Kk
TEMEAEGKI RT 39-47 mouse  
EKEGKISKI RT 42-50 B human B*5101, B51
NTPVFAIKK RT 57-65 human A*0301, A*6801, A3 supertype
NTPVFAIKKK RT 57-66 B, multiple baboon, chimpanzee, goat, human A11, A68, B8
KLVDFRELNK RT 73-82 B, multiple human A*0301, A3
GIPHPAGLK RT 93-101 B, multiple human A*0301, A3
GIPHPAGLKK RT 93-102 CRF01_AE human A11
TVLDVGDAY RT 107-115 AG, B human B*3501, B35
TVLDVGDIY RT 107-115 human B35
VLDVGDAYFSV RT 108-118 B human, transgenic mouse A*0201, A2
DAYFSVPL RT 113-120 human A24, B*5101, B51
FSVPLDEDF RT 116-124 C human B*5702, B*5703, B35
SVPLDESFRK RT 117-126 CRF01_AE human A11
VPLDEDFRKY RT 118-127 B, C human B*3501, B35
VPLDKDFRKY RT 118-127 human B*3501, B35
KYTAFTIPSI RT 126-135 human A2
YTAFTIPSI RT 127-135 B, C human A*0205, A2, A2 supertype
YTAFTIPSV RT 127-135 human A02, A2
TAFTIPSI RT 128-135 B human A*0201, A*0217, B*51, B*5101, B51
NNETPGVRY RT 136-144 B human B*1801
NETPGIRYQY RT 137-146 C human B18
IRYQYNVL RT 142-149 C human B*1401
LPQGWKGSPAI RT 149-159 C human B*3910
QGWKGSPAI RT 151-159 human B*5101
WKGSPAIFQSSMT RT 153-165 human B7
SPAIFQSSM RT 156-164 B, C human B*0702, B*3501, B*4202, B*8101, B35, B7
SPAIFQSSMT RT 156-165 B, multiple human B35, B7
AIFQSSMTK RT 158-166 A, B, C, CRF01_AE, D, multiple human, macaque A*0301, A*1101, A*6801, A11, A3, A3 supertype, A33, A68
SIFQSSMTK RT 158-166 human A11
IFQSSMTKI RT 159-167 C mouse H-2d
MTKILEPFR RT 164-172 B human A3 supertype
KQNPDIVIY RT 173-181 B human A*3002, A30, B*1503
AQNPEIVIY RT 173-181 C human A*3002
AQNPEIVIYQY RT 173-183 C human A*3002
NPEIVIYQY RT 175-183 C human B18, B35
NPDIVIYQY RT 175-183