HIV molecular immunology database

 

HIV Binding Motif Scanner Motif Dictionary

Download the HLA genotype/motif dictionary.

Genotype Motif Reference
A*01 xx[DE]xxxxx[Y] SYFPEITHI
A*0101 xx[DE]xxxxx[Y] Marsh2000
A*0201 x[L(M)]xxxxxx[V(L)] Marsh2000
A*0201 x[LM]xxxxxx[VL] SYFPEITHI
A*0202 x[L]xxxxxx[L] Marsh2000
A*0202 x[L(A)]xxxxxx[LV] SYFPEITHI
A*0204 x[L]xxxxxx[L] Marsh2000
A*0204 x[L]xxxxxx[L] SYFPEITHI
A*0205 x[V(QL)]xxxxxx[L] Marsh2000
A*0205 xxxxxxxx[L] SYFPEITHI
A*0206 x[V(Q)]xxxxxxx Marsh2000
A*0206 x[V(Q)]xxxxxx[V(L)] SYFPEITHI
A*0207 x[L][D]xxxxx[L] Marsh2000
A*0207 x[L]xxxxxx[L] SYFPEITHI
A*0214 x[QV]xxx[K]xx[VL] Luscher2001
A*0214 x[VQ(L)]xxxxxx[L] Marsh2000
A*0214 x[VQL(A)]xxxxxx[L(VM)] SYFPEITHI
A*0217 x[L]xxxxxx[L] SYFPEITHI
A*03 x[LVM]xxxxxx[KYF] SYFPEITHI
A*0301 x[LVM(IAST)]xxxxxx[KY(FR)] Marsh2000
A*1101 xxxxxxxx[K] Marsh2000
A*1101 xxxxxxxx[KR] SYFPEITHI
A*24 x[Y(F)]xxxxxx[ILF] SYFPEITHI
A*2402 x[YF]xxxxxx[FWIL] Marsh2000
A*2402 x[YF]xxxxxx[LFI] SYFPEITHI
A*2501 xxxxxxxxx[W] Yusim2004
A*2601 x[VTIFL]xxxxxx[YF] Marsh2000
A*2601 x[VTILF]xxxxxx[YF] SYFPEITHI
A*2602 x[VTILF]xxxxxx[YFML] Marsh2000
A*2602 x[VTILF]xxxxxx[YF(ML)] SYFPEITHI
A*2603 x[VFILT]xxxxxx[YFML] Marsh2000
A*2603 x[VTILF]xxxxxx[YFML] SYFPEITHI
A*2902 x[E(M)]xxxxxx[Y(L)] Marsh2000
A*2902 x[E(M)]xxxxxx[Y(L)] SYFPEITHI
A*3001 x[YF(VLMIT)]xxxxxx[L(YFM)] SYFPEITHI
A*3002 x[YFLV]xxxxxx[Y] SYFPEITHI
A*3003 x[FYIVL]xxxxxx[Y] SYFPEITHI
A*3004 xxxxxxxx[YML] SYFPEITHI
A*3101 xxxxxxxx[R] Marsh2000
A*3101 xxxxxxxx[R] SYFPEITHI
A*3201 x[I]xxxxxxx[W] Yusim2004
A*3303 xxxxxxxx[R] Marsh2000
A*3303 xxxxxxxx[R] SYFPEITHI
A*6601 x[TV(APLIC)]xxxxxx[RK] SYFPEITHI
A*6801 x[VT]xxxxxx[RK] Marsh2000
A*6801 x[VT]xxxxxx[RK] SYFPEITHI
A*6802 x[TV]xxxxxx[VL] Yusim2004
A*6901 x[VT(A)]xxxxxx[VL] Marsh2000
A*6901 x[VTA]xxxxxx[VL(MQ)] SYFPEITHI
B*07 x[P]xxxxxx[LF] SYFPEITHI
B*0702 x[P]xxxxxx[L(F)] Marsh2000
B*0702 x[P(V)]xxxxxx[L] SYFPEITHI
B*0703 x[P]xxxxxxx Marsh2000
B*0703 x[P(ND)]xxxxxx[L] SYFPEITHI
B*0705 x[P]xxxxxxx Marsh2000
B*0705 x[P]xxxxxx[L(F)] SYFPEITHI
B*08 xx[K(R)]x[KR]xxx[L(FM)] SYFPEITHI
B*0801 xx[K(R)]x[K(RH)]xxxx Marsh2000
B*0801 xx[K(R)]xxxxxx SYFPEITHI
B*0802 xx[K(RY)]x[K(H)]xxxx Marsh2000
B*0802 xx[K(RY)]x[K(H)]xxxx SYFPEITHI
B*14 x[RK]xx[RH]xxx[L] SYFPEITHI
B*1402 x[R(K)]xx[R(H)]xxx[L] Marsh2000
B*1501 x[Q(LMVP)]xxxxxxx[YF] Marsh2000
B*1501 x[QL(MVP)]xxxxxxx[FY] SYFPEITHI
B*1502 xxxxxxxx[YF(M)] Marsh2000
B*1502 x[QLVP]xxxxxx[FYM] SYFPEITHI
B*1503 x[QK]xxxxxx[YF] SYFPEITHI
B*1508 x[P(A)]xxxxxx[YF] Marsh2000
B*1508 x[PA]xxxxxx[YF] SYFPEITHI
B*1509 x[H]xxxxxx[L(F)] Marsh2000
B*1509 x[H]xxxxxx[LFM] SYFPEITHI
B*1510 x[H]xxxxxx[L(F)] SYFPEITHI
B*1512 x[Q(LM)]xxxxxx[YF] SYFPEITHI
B*1513 xxxxxxxx[W] Marsh2000
B*1513 x[LIQVPM]xxxxxx[W] SYFPEITHI
B*1516 x[T(S)]xxxxxx[Y(IVFM)] Marsh2000
B*1516 x[ST(F)]xxxxxx[IVYF] SYFPEITHI
B*1517 x[TS]xxxx[L]x[Y(F)] Marsh2000
B*1517 x[TS]xxxxxx[YFLI] SYFPEITHI
B*1518 x[H]xxxxxx[Y(F)] SYFPEITHI
B*18 x[E]xxxxxxx Marsh2000
B*27 x[R]xxxxxxx SYFPEITHI
B*2701 x[RQ]xxxxxx[Y] Marsh2000
B*2701 x[RQ]xxxxxx[Y] SYFPEITHI
B*2702 x[R]xxxxxx[FY(ILW)] Marsh2000
B*2702 x[R]xxxxxx[FYILW] SYFPEITHI
B*2703 x[R(M)]xxxxxxx Marsh2000
B*2703 x[R]xxxxxx[YF(RMWL)] SYFPEITHI
B*2704 x[R]xxxxxx[YLF] Marsh2000
B*2704 x[R]xxxxxx[YLF] SYFPEITHI
B*2705 x[R(K)]xxxxxxx Marsh2000
B*2705 x[R]xxxxxx[LFYRHK(MI)] SYFPEITHI
B*2706 x[R]xxxxxx[L] Marsh2000
B*2706 x[R]xxxxxx[L] SYFPEITHI
B*2707 x[R]xxxxxx[L] Marsh2000
B*2707 x[R]xxxxxx[LF] SYFPEITHI
B*2709 x[R]xxxxxx[LVFIM] Marsh2000
B*2710 x[R]xxxxxx[YF] Marsh2000
B*35 x[P(AVYRD)]xxxxxx[YFMLI] SYFPEITHI
B*3501 x[P(AV)]xxxxxxx Marsh2000
B*3501 x[P(AVYRD)]xxxxxx[YFMLI] SYFPEITHI
B*3503 x[P(A)]xxxxxx[ML(F)] Marsh2000
B*3503 x[P(MILFV)]xxxxxx[ML(F)] SYFPEITHI
B*3505 x[P]xxxxxx[F] Kenneally2000
B*3701 x[D(E)]xxxxx[FML][IL] Marsh2000
B*3701 x[DE(HPGSL)]xxxxx[FML(QKYL)][IL(TENDQGH)] SYFPEITHI
B*3801 xxxxxxxx[FL] Marsh2000
B*3801 xxxxxxxx[FL(I)] SYFPEITHI
B*3901 x[RH]xxxxxx[L] Marsh2000
B*3901 x[RH]xxxxxx[L(VIM)] SYFPEITHI
B*3902 x[KQ]xxxxxx[L] Marsh2000
B*3902 x[KQ]xxxxxx[L(FM)] SYFPEITHI
B*3909 x[RH(P)]xxxxxx[LF] SYFPEITHI
B*40 x[E]xxxxxx[LWMATR] SYFPEITHI
B*4001 x[E]xxxxxx[L] Marsh2000
B*4001 x[E]xxxxxx[L] SYFPEITHI
B*4002 x[E]xxxxxx[IAVL] Yusim2004
B*4006 x[E]xxxxxx[V] Marsh2000
B*4006 x[E(P)]xxxxxx[V(AP)] SYFPEITHI
B*4201 x[P]xxxxxx[L] Yusim2004
B*44 x[E]xxxxxx[Y] SYFPEITHI
B*4402 x[E]xxxxxx[YF] Marsh2000
B*4402 x[E(MILD)]xxxxxx[FY] SYFPEITHI
B*4403 x[E]xxxxxx[YF] Marsh2000
B*4403 x[E(MILVD)]xxxxxx[YF] SYFPEITHI
B*4601 xxxxxxxx[YF] Marsh2000
B*4601 x[M(I)]xxxxxx[YF] SYFPEITHI
B*4801 x[QK]xxxxxx[L] Marsh2000
B*4801 x[QK(M)]xxxxxx[L] SYFPEITHI
B*5101 xxxxxxxx[FI] Marsh2000
B*5101 x[APG(WF)]xxxxxx[VI(WMVL)] SYFPEITHI
B*5102 x[APG]xxxxxx[IV] Marsh2000
B*5102 x[APG]xxxxxx[IV] SYFPEITHI
B*5103 xxxxxxxx[VIF] Marsh2000
B*5103 x[APG(FW)]xxxxxx[VIF] SYFPEITHI
B*5201 xxxxxxx[IV][IV] Marsh2000
B*5201 xxxxxxx[IV(MF)][IV(MF)] SYFPEITHI
B*5301 x[P]xxxxxxx Marsh2000
B*5301 x[P]xxxxxx[WFL] SYFPEITHI
B*5401 x[P]xxxxxxx Marsh2000
B*5401 x[P]xxxxxxx SYFPEITHI
B*5501 x[P]xxxxxxx Marsh2000
B*5501 x[P]xxxxxxx SYFPEITHI
B*5502 x[P]xxxxxxx Marsh2000
B*5502 x[P]xxxxxxx SYFPEITHI
B*5601 x[P]xxxxxxx Marsh2000
B*5601 x[P]xxxxxx[A(L)] SYFPEITHI
B*5701 x[ATS]xxxxxx[FW] Marsh2000
B*5701 x[ATS]xxxxxx[FWY] SYFPEITHI
B*5702 x[ATS]xxxxxx[FW] Marsh2000
B*5702 x[ATS]xxxxxx[FW] SYFPEITHI
B*5801 x[ATS]xxxxxx[WF] Marsh2000
B*5801 x[AST(G)]xxxxxx[FW(Y)] SYFPEITHI
B*5802 x[ST]xxx[R]xx[F] Marsh2000
B*5802 x[ST]xxx[R]xx[F] SYFPEITHI
B*6701 x[P]xxxxxxx Marsh2000
B*6701 x[P]xxxxxxx SYFPEITHI
B*7301 x[R]xxxxxx[P] Marsh2000
B*7301 x[R]xxxxxx[P] SYFPEITHI
B*7801 x[PAG]xxxxxxx Marsh2000
B*7801 x[PAG]xxxxx[A(KS)]x SYFPEITHI
B*8101 x[P]xxxxxx[L] Yusim2004
Cw*0102 xx[P]xxxxx[L] Marsh2000
Cw*0102 x[AL]xxxxxx[L] SYFPEITHI
Cw*0103 x[AL]xxxxxx[L] Yusim2004
Cw*0202 x[A]xxxxxx[L] Yusim2004
Cw*0203 x[A]xxxxxx[L] Yusim2004
Cw*0301 xxxxxxxx[LFMI] SYFPEITHI
Cw*0302 x[A]xxxxxx[FWY] Yusim2004
Cw*0303 x[A]xxxxxx[LM] Yusim2004
Cw*0304 x[A]xxxxxx[LM] Marsh2000
Cw*0304 x[A]xxxxxx[LM] SYFPEITHI
Cw*0305 x[A]xxxxxx[LM] Yusim2004
Cw*0306 x[A]xxxxxx[LM] Yusim2004
Cw*0307 x[A]xxxxxx[LF] Yusim2004
Cw*0308 x[A]xxxxxx[LM] Yusim2004
Cw*0309 x[A]xxxxxx[LM] Yusim2004
Cw*0401 x[YP]xxxxxxx Marsh2000
Cw*0401 x[YPF]xxxxxx[LFM] SYFPEITHI
Cw*0402 x[YP]xxxxxx[LF] Yusim2004
Cw*0403 x[P]xxxxxx[LF] Yusim2004
Cw*0404 x[YP]xxxxxx[LF] Yusim2004
Cw*0405 x[YP]xxxxxx[LF] Yusim2004
Cw*0406 x[P]xxxxxx[LF] Yusim2004
Cw*0501 x[A]xxxxxx[LF] Yusim2004
Cw*0502 x[A]xxxxxx[LF] Yusim2004
Cw*0601 xxxxxxxx[LIVY] SYFPEITHI
Cw*0602 xxxxxxxx[L] Marsh2000
Cw*0602 xxxxxxxx[LIVY] SYFPEITHI
Cw*0603 x[ALP]xxxxxx[L] Yusim2004
Cw*0604 x[RQ]xxxxxx[L] Yusim2004
Cw*0701 x[RHK]xxxxxx[Y] Yusim2004
Cw*0702 xxxxxxxx[YFL] SYFPEITHI
Cw*0703 x[YP]xxxxxx[YL] Yusim2004
Cw*0704 x[RQ]xxxxxx[LM] Yusim2004
Cw*0705 x[RQ]xxxxxx[Y] Yusim2004
Cw*0706 x[RHK]xxxxxx[Y] Yusim2004
Cw*0707 x[RHK]xxxxxx[YL] Yusim2004
Cw*0708 x[RQ]xxxxxx[YL] Yusim2004
Cw*0709 x[RHK]xxxxxx[YL] Yusim2004
Cw*0710 x[YP]xxxxxx[FWY] Yusim2004
Cw*0711 x[R]xxxxxx[LM] Yusim2004
Cw*0712 x[R]xxxxxx[LM] Yusim2004
Cw*0801 x[A]xxxxxx[LM] Yusim2004
Cw*0802 x[A]xxxxxx[LM] Yusim2004
Cw*0803 x[A]xxxxxx[LM] Yusim2004
Cw*0804 x[A]xxxxxx[LM] Yusim2004
Cw*0805 x[A]xxxxxx[LM] Yusim2004
Cw*0806 x[A]xxxxxx[LM] Yusim2004
Cw*1202 x[A]xxxxxx[FWY] Yusim2004
Cw*1203 x[A]xxxxxx[FWY] Yusim2004
Cw*1204 x[A]xxxxxx[L] Yusim2004
Cw*1205 x[A]xxxxxx[L] Yusim2004
Cw*1206 x[A]xxxxxx[FWY] Yusim2004
Cw*1402 x[YP]xxxxxx[FWY] Yusim2004
Cw*1403 x[YP]xxxxxx[FWY] Yusim2004
Cw*1404 x[YP]xxxxxx[FWY] Yusim2004
Cw*1502 x[A]xxxxxx[LMYF] Yusim2004
Cw*1503 x[A]xxxxxx[LMYF] Yusim2004
Cw*1504 x[A]xxxxxx[L] Yusim2004
Cw*1505 x[A]xxxxxx[L] Yusim2004
Cw*1506 x[A]xxxxxx[LM] Yusim2004
Cw*1507 x[A]xxxxxx[LMY] Yusim2004
Cw*1601 x[A]xxxxxx[FWY] Yusim2004
Cw*1602 x[A]xxxxxx[L] Yusim2004
Cw*1604 x[A]xxxxxx[L] Yusim2004
Cw*1701 x[A]xxxxxx[L] Yusim2004
Cw*1702 x[A]xxxxxx[L] Yusim2004
Cw*1801 x[RQ]xxxxxx[LY] Yusim2004
Cw*1802 x[RQ]xxxxxx[LY] Yusim2004
DPA1*0102/DPB1*0201 [FLMVWY]xxx[FLMY]xx[IAMV] SYFPEITHI
DPA1*0103/DPB1*0201 [YLVFK]xx[DSQT]x[YFWV]xx[LVI] Marsh2000,Chicz1997
DPA1*0103/DPB1*0201 [FLM]xxx[FL]xx[IA] Marsh2000,Rotzschke1994
DPA1*0201/DPB1*0401 [FLYM(IVA)]xxxxx[FLY(MVIA)]xx[VYI(AL)] Marsh2000
DPA1*0201/DPB1*0401 [FLYMIVA]xxxxx[FLYMVIA]xx[VYIAL] SYFPEITHI
DPA1*0201/DPB1*0901 [RK]xxxx[AGL]xx[LV] Marsh2000
DPB1*0301 x[R]xxxxxxx Marsh2000
DQA1*0101/DQB1*0501 [L]xxx[YFW] Marsh2000
DQA1*0102/DQB1*0602 xxxxx[LIV(APST)]xx[AGST(LIVP)] Marsh2000
DQA1*0301/DQB1*0301 xx[AGST]x[AVLI] Marsh2000
DQA1*0301/DQB1*0301 [DEW]xx[AGST]x[ACLM] SYFPEITHI
DQA1*0301/DQB1*0302 [RK]xxxx[AG]xx[NED] Marsh2000
DQA1*0301/DQB1*0302 [TSW]xxxxxxx[RE] SYFPEITHI
DQA1*0501/DQB1*0201 [FWYILV]xx[DELVIH]x[PDE(H)][ED]x[FYWVILM] Marsh2000
DQA1*0501/DQB1*0201 [FWYILV]xx[DELVIH]x[PDEHPA][DE]x[FWYILVM] SYFPEITHI
DQA1*0501/DQB1*0301 [FYIMLV]xxx[VLIMY]x[YFMLVI] Marsh2000
DQA1*0501/DQB1*0301 [WYAVM]xx[A]x[AIVTS]xxx[QN] SYFPEITHI
DQB1*0602 [AFCILMNQSTVWYDE]x[AFGILMNQSTVWYCDE][AFGILMNQSTVWY]x[LIVAPST]xx[ASTGLIVP] SYFPEITHI
DRB1*0101 [YFWLIMVA]xx[LMAIVN]x[AGSTCP]xx[LAIVNFYMW] Marsh2000
DRB1*0101 [YVLFIAMW]xx[LAIVMNQ]x[AGSTCP]xx[LAIVNFY] SYFPEITHI
DRB1*0102 [ILVM]xx[ALM]x[AGSTCP]xx[ILAMYW] Marsh2000
DRB1*0102 [ILVM]xx[ALM]x[AGSTP]xx[ILAMYW] SYFPEITHI
DRB1*0301 [LIFMV]xx[D]x[KR(EQN)]x[L][YLF] Marsh2000,Malcherek1993
DRB1*0301 [LIFMV]xx[D]x[KREQN]xx[YLF] SYFPEITHI
DRB1*0301 or DRB3*0201 [FILVY]xx[DNQT] Marsh2000,Chicz1992
DRB1*0401 [FLV]xxxxxxx[NQST] Marsh2000
DRB1*0401 or DRB4 [FYWILVM]xx[FWILVADE]x[NSTQHR]xx[K] Marsh2000,Friede1996
DRB1*0401 or DRB4*0101 [FYW]xxxxxxx[ST] Marsh2000,Verreck1995
DRB1*0401 or DRB4*0101 [FYWILVM]xx[PWILVADE]x[NSTQHR][DEHKNQRSTYACILMV]x[DEHKNQRSTYACILMV] SYFPEITHI
DRB1*0402 or DRB4 [VILM]xx[YFWILMRNH]x[NSTQHK]x[RKHNQP]x[H] Marsh2000
DRB1*0402 or DRB4 [VILM]xx[YFWILMRN]x[NQSTK][RKHNQP]x[DEHLNQRSTYCILMVHA] SYFPEITHI
DRB1*0404 or DRB4 [VILM]xx[FYWILVMADE]x[NTSQR]xx[K] Marsh2000
DRB1*0404 or DRB4 [VILM]xx[FYWILVMADE]x[NTSQR]xx[K] SYFPEITHI
DRB1*0405 or DRB4 [FYWVILM]xx[VILMDE]x[NSTQKD]xxx[DEQ] Marsh2000
DRB1*0405 or DRB4 [FYWVILM]xx[VILMDE]x[NSTQKD]xxx[DEQ] SYFPEITHI
DRB1*0405 or DRB4*0101 [Y]xxxx[VT]xxx[D] Marsh2000
DRB1*0407 or DRB4 [FYW]xx[AVTK]x[NTDS]xxx[QN] Marsh2000
DRB1*0407 or DRB4 [FYW]xx[AVK]x[NTDS]xxx[QN] SYFPEITHI
DRB1*0701 [FILVY]xxxx[NST] Marsh2000
DRB1*0701 [FYWILV]xx[DEHKNQRSTY]x[NST]xx[VILYF] SYFPEITHI
DRB1*0801 [FILVY]xxx[HKR] Marsh2000
DRB1*0901 or DRB4*0101 [YFWL]xx[AS] Marsh2000
DRB1*0901 or DRB4*0101 [WYFL]xx[AVS] SYFPEITHI
DRB1*1101 [YF]xx[LVMAFY]x[RKH]xx[AGSP] Marsh2000
DRB1*1101 [WYF]xx[LVMAFY]x[RKH]xx[AGSP] SYFPEITHI
DRB1*1101 or DRB3*0202 [YF]xxxx[RK]x[RK] Marsh2000
DRB1*1104 [ILV]xx[LVMAFY]x[RKH]xx[AGSP] Marsh2000
DRB1*1104 [ILV]xx[LVMAFY]x[RKH]xx[AGSP] SYFPEITHI
DRB1*1201 or DRB3 [ILFY(V)]x[LNM(VA)]xx[VY(FIN)]xx[YFM(IV)] Marsh2000
DRB1*1201 or DRB3 [ILFYV]x[LMNVA]xx[VYFINA]xx[YFMIV] SYFPEITHI
DRB1*1301 [IVF]xx[YWLVAM]x[RK]xx[YFAST] Marsh2000
DRB1*1301 [ILV]xx[LVMAWY]x[RK]xx[YFAST] SYFPEITHI
DRB1*1301 or DRB3*0101 [ILV]xxxx[RK]xx[Y] Marsh2000
DRB1*1302 [YFVAI]xx[YWLVAM]x[RK]xx[YFAST] Marsh2000
DRB1*1302 [YFVAI]xx[LVMAWY]x[RK]xx[YFAST] SYFPEITHI
DRB1*1302 or DRB3*1301 [ILFY]xxxx[RK]xx[Y] Marsh2000
DRB1*1501 [LVI]xx[FYI]xx[ILVMF] Marsh2000
DRB1*1501 [LVI]xx[FYI]xx[ILVMF] SYFPEITHI
DRB1*1501 or DRB5*0101 [ILV]xxxxxxxx[HKR] Marsh2000
DRB3*0202 [YFIL]xx[N]x[ASPDE]xx[LVISG] Marsh2000
DRB3*0202 [YFIL]xx[N]x[ASPDE]xx[LVISG] SYFPEITHI
DRB3*0301 [ILV]xx[N]x[ASPDE]xx[ILV] Marsh2000
DRB3*0301 [ILV]xx[N]x[ASPDE]xx[ILV] SYFPEITHI
DRB5*0101 [FYLM]xx[QVIM]xxxx[RK] Marsh2000
DRB5*0101 [FYLM]xx[QVIM]xxxx[RK] SYFPEITHI
Last modified: Fri Aug 15 08:59:29 MDT 2003
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