Peptide Data

This table shows the peptide data, sorted by HXB2 location. The table also lists the peptides' locations relative to the B reference sequence and the number of subject reactions (out of 150 subjects) for each peptide. The entropy is the average of the entropy scores for each amino acid in the peptide based on the 2001 HIV-1 sequence database B clade alignment.

The data are also available in a tab-separated value (TSV) file for import to your favorite spreadsheet.

Peptide	Sequence	Protein	HXB2 loc		Ref loc		Reactions	Entropy
1	MGARASVLSGGELDRWEK	p17	1	18	1	18	9	0.1616
2	SGGELDRWEKIRLRPGGK	p17	9	26	9	26	13	0.1582
3	EKIRLRPGGKKKYKLKHI	p17	17	34	17	34	25	0.1843
4	GKKKYKLKHIVWASREL	p17	25	41	25	41	21	0.1557
5	KHIVWASRELERFAV	p17	32	46	32	46	25	0.0844
6	ASRELERFAVNPGLL	p17	37	51	37	51	20	0.0694
7	ERFAVNPGLLETSEGCR	p17	42	58	42	58	16	0.1226
8	GLLETSEGCRQILGQL	p17	49	64	49	64	2	0.1370
9	EGCRQILGQLQPSLQTGS	p17	55	72	55	72	0	0.1691
10	QLQPSLQTGSEELRSLY	p17	63	79	63	79	5	0.2500
11	TGSEELRSLYNTVATLY	p17	70	86	70	86	33	0.2168
12	SLYNTVATLYCVHQRIEV	p17	77	94	77	94	38	0.2741
13	LYCVHQRIEVKDTKEAL	p17	85	101	85	101	9	0.1970
14	IEVKDTKEALEKIEEEQNK	p17	92	110	92	110	2	0.1884
15	LEKIEEEQNKSKKKAQQA	p17	101	118	101	118	3	0.1715
16	NKSKKKAQQAAADTGNSSQV	p17	109	128	109	128	5	0.2231
17	AADTGNSSQVSQNYPIV	p17-p24	119	3	119	3	4	0.2035
18	SQVSQNYPIVQNLQGQMV	p17-p24	126	11	126	11	2	0.1248
19	IVQNLQGQMVHQAISPR	p24	2	18	2	18	11	0.1188
20	QMVHQAISPRTLNAWVKV	p24	9	26	9	26	21	0.0644
21	PRTLNAWVKVVEEKAF	p24	17	32	17	32	10	0.0432
22	WVKVVEEKAFSPEVIPMF	p24	23	40	23	40	21	0.0315
23	AFSPEVIPMFSALSEGA	p24	31	47	31	47	23	0.0196
24	PMFSALSEGATPQDLNTM	p24	38	55	38	55	24	0.0254
25	GATPQDLNTMLNTVGGH	p24	46	62	46	62	30	0.0073
26	NTMLNTVGGHQAAMQMLK	p24	53	70	53	70	8	0.0131
27	GGHQAAMQMLKETINEEA	p24	60	77	60	77	11	0.0131
28	LKETINEEAAEWDRLHPV	p24	69	86	69	86	20	0.0596
29	AAEWDRLHPVHAGPIA	p24	77	92	77	92	30	0.1702
30	LHPVHAGPIAPGQMREPR	p24	83	100	83	100	17	0.1465
31	IAPGQMREPRGSDIA	p24	91	105	91	105	1	0.0835
32	MREPRGSDIAGTTSTL	p24	96	111	96	111	8	0.0155
33	SDIAGTTSTLQEQIGWM	p24	102	118	102	118	10	0.0196
34	STLQEQIGWMTNNPPIPV	p24	109	126	109	126	6	0.0653
35	WMTNNPPIPVGEIYKRWI	p24	117	134	117	134	24	0.0594
36	PVGEIYKRWIILGLNKIV	p24	125	142	125	142	33	0.0302
37	WIILGLNKIVRMYSPTSI	p24	133	150	133	150	20	0.0836
38	IVRMYSPTSILDIRQGPK	p24	141	158	141	158	9	0.0871
39	SILDIRQGPKEPFRDYV	p24	149	165	149	165	4	0.0471
40	GPKEPFRDYVDRFYKTLR	p24	156	173	156	173	25	0.0225
41	YVDRFYKTLRAEQASQEV	p24	164	181	164	181	38	0.0648
42	LRAEQASQEVKNWMTETL	p24	172	189	172	189	34	0.0786
43	EVKNWMTETLLVQNA	p24	180	194	180	194	5	0.0783
44	MTETLLVQNANPDCKTIL	p24	185	202	185	202	18	0.0479
45	NANPDCKTILKALGPAA	p24	193	209	193	209	14	0.0705
46	TILKALGPAATLEEMMTA	p24	200	217	200	217	18	0.0462
47	AATLEEMMTACQGVGGPGH	p24	208	226	208	226	2	0.0713
48	ACQGVGGPGHKARVLAEA	p24-p2p7p1p6	217	3	217	3	13	0.0481
49	GHKARVLAEAMSQVTNSA	p24-p2p7p1p6	225	11	225	11	15	0.1880
50	EAMSQVTNSATIMMQR	p2p7p1p6	2	17	2	17	5	0.2550
51	TNSATIMMQRGNFRNQRK	p2p7p1p6	8	25	8	25	4	0.2883
52	QRGNFRNQRKTVKCF	p2p7p1p6	16	30	16	30	6	0.2395
53	RNQRKTVKCFNCGKEGHI	p2p7p1p6	21	38	21	38	1	0.1926
54	CFNCGKEGHIAKNCRAPR	p2p7p1p6	29	46	29	46	15	0.1136
55	HIAKNCRAPRKKGCWK	p2p7p1p6	37	52	37	52	17	0.1779
56	RAPRKKGCWKCGKEGHQM	p2p7p1p6	43	60	43	60	4	0.1178
57	WKCGKEGHQMKDCTERQA	p2p7p1p6	51	68	51	68	1	0.1100
58	QMKDCTERQANFLGKIW	p2p7p1p6	59	75	59	75	6	0.0768
59	RQANFLGKIWPSHKGR	p2p7p1p6	66	81	66	81	35	0.0648
60	GKIWPSHKGRPGNFLQSR	p2p7p1p6	72	89	72	89	11	0.0906
61	GRPGNFLQSRPEPTA	p2p7p1p6	80	94	80	94	4	0.0903
62	FLQSRPEPTAPPEESFRF	p2p7p1p6	85	102	85	102	5	0.1383
63	TAPPEESFRFGEETTTPSQK	p2p7p1p6	93	112	93	112	8	0.1581
64	GEETTTPSQKQEPIDKEL	p2p7p1p6	103	120	103	120	0	0.1796
65	QKQEPIDKELYPLASLR	p2p7p1p6	111	127	111	127	8	0.2078
66	KELYPLASLRSLFGNDPSSQ	p2p7p1p6	118	137	118	137	15	0.1614
145	FFREDLAFPQGKAREF	Gag_Pol_TF	1	16	1	16	0	0.1849
146	AFPQGKAREFSSEQTRA	Gag_Pol_TF	7	23	7	23	0	0.1628
147	REFSSEQTRANSPTRREL	Gag_Pol_TF	14	31	14	31	0	0.1833
148	RANSPTRRELQVWGR	Gag_Pol_TF	22	36	22	36	0	0.2201
149	TRRELQVWGRDNNSLSEA	Gag_Pol_TF	27	44	27	44	1	0.1588
150	GRDNNSLSEAGADRQGTV	Gag_Pol_TF	35	52	35	52	0	0.1828
151	EAGADRQGTVSFSFPQI	Gag_Pol_TF-Protease	43	3	43	3	1	0.2460
152	GTVSFSFPQITLWQRPLV	Gag_Pol_TF-Protease	50	11	50	11	2	0.1753
153	QITLWQRPLVTIKIGGQL	Protease	2	19	2	19	8	0.1302
154	LVTIKIGGQLKEALL	Protease	10	24	10	24	4	0.1299
155	IGGQLKEALLDTGADDTV	Protease	15	32	15	32	0	0.0387
156	LLDTGADDTVLEEMNL	Protease	23	38	23	38	0	0.1379
157	DDTVLEEMNLPGRWKPKM	Protease	29	46	29	46	7	0.1619
158	NLPGRWKPKMIGGIGGFI	Protease	37	54	37	54	6	0.1032
159	KMIGGIGGFIKVRQYDQI	Protease	45	62	45	62	5	0.0877
160	FIKVRQYDQILIEICGHK	Protease	53	70	53	70	1	0.1781
161	QILIEICGHKAIGTVLV	Protease	61	77	61	77	1	0.1614
162	GHKAIGTVLVGPTPVNII	Protease	68	85	68	85	11	0.0221
163	LVGPTPVNIIGRNLLTQI	Protease	76	93	76	93	10	0.0481
164	IIGRNLLTQIGCTLNFPI	Protease-RT	84	2	84	2	7	0.0481
165	QIGCTLNFPISPIETVPV	Protease-RT	92	10	92	10	0	0.0571
166	PISPIETVPVKLKPGM	RT	1	16	1	16	6	0.0565
167	TVPVKLKPGMDGPKVKQW	RT	7	24	7	24	2	0.0420
168	GMDGPKVKQWPLTEEKIK	RT	15	32	15	32	6	0.0420
169	QWPLTEEKIKALVEI	RT	23	37	23	37	0	0.0602
170	EEKIKALVEICTEMEK	RT	28	43	28	43	0	0.0797
171	LVEICTEMEKEGKISKI	RT	34	50	34	50	1	0.0825
172	MEKEGKISKIGPENPY	RT	41	56	41	56	0	0.0473
173	ISKIGPENPYNTPVFAIK	RT	47	64	47	64	5	0.0420
174	PYNTPVFAIKKKDSTKWR	RT	55	72	55	72	7	0.0544
175	IKKKDSTKWRKLVDFREL	RT	63	80	63	80	0	0.0471
176	WRKLVDFRELNKRTQDFW	RT	71	88	71	88	2	0.0275
177	ELNKRTQDFWEVQLGIPH	RT	79	96	79	96	1	0.0349
178	FWEVQLGIPHPAGLKKKK	RT	87	104	87	104	5	0.0547
179	PHPAGLKKKKSVTVLDV	RT	95	111	95	111	0	0.0658
180	KKKSVTVLDVGDAYFSV	RT	102	118	102	118	11	0.0601
181	LDVGDAYFSVPLDKDFRK	RT	109	126	109	126	9	0.1184
182	SVPLDKDFRKYTAFTI	RT	117	132	117	132	9	0.1333
183	DFRKYTAFTIPSINNETPGI	RT	123	142	123	142	5	0.1266
184	PSINNETPGIRYQYNVL	RT	133	149	133	149	13	0.0966
185	PGIRYQYNVLPQGWK	RT	140	154	140	154	2	0.0385
186	QYNVLPQGWKGSPAIF	RT	145	160	145	160	4	-0.0000
187	QGWKGSPAIFQSSMTKIL	RT	151	168	151	168	16	0.0567
188	IFQSSMTKILEPFRK	RT	159	173	159	173	4	0.0858
189	MTKILEPFRKQNPDIVIY	RT	164	181	164	181	6	0.1040
190	RKQNPDIVIYQYMDDLYV	RT	172	189	172	189	17	0.0802
191	IYQYMDDLYVGSDLEI	RT	180	195	180	195	3	0.0083
192	DLYVGSDLEIGQHRTKI	RT	186	202	186	202	3	0.0832
193	LEIGQHRTKIEELRQHLL	RT	193	210	193	210	8	0.1254
194	KIEELRQHLLRWGFTTPDK	RT	201	219	201	219	20	0.1366
195	LRWGFTTPDKKHQKEPPF	RT	210	227	210	227	1	0.0947
196	DKKHQKEPPFLWMGYELH	RT	218	235	218	235	1	0.0210
197	PFLWMGYELHPDKWTV	RT	226	241	226	241	3	0.0166
198	YELHPDKWTVQPIVLPEK	RT	232	249	232	249	2	0.0539
199	TVQPIVLPEKDSWTVNDI	RT	240	257	240	257	13	0.0466
200	EKDSWTVNDIQKLVGKL	RT	248	264	248	264	3	0.0078
201	NDIQKLVGKLNWASQIYA	RT	255	272	255	272	9	0.0492
202	KLNWASQIYAGIKVKQL	RT	263	279	263	279	12	0.1241
203	IYAGIKVKQLCKLLRGTK	RT	270	287	270	287	5	0.1546
204	QLCKLLRGTKALTEVIPL	RT	278	295	278	295	2	0.1488
205	TKALTEVIPLTEEAELEL	RT	286	303	286	303	6	0.1591
206	PLTEEAELELAENREILK	RT	294	311	294	311	0	0.0916
207	ELAENREILKEPVHGVYY	RT	302	319	302	319	17	0.0764
208	LKEPVHGVYYDPSKDLIA	RT	310	327	310	327	2	0.1484
209	YYDPSKDLIAEIQKQGQGQW	RT	318	337	318	337	8	0.1661
210	EIQKQGQGQWTYQIY	RT	328	342	328	342	2	0.1261
211	GQGQWTYQIYQEPFKNLK	RT	333	350	333	350	16	0.1217
212	IYQEPFKNLKTGKYARMR	RT	341	358	341	358	11	0.1729
213	LKTGKYARMRGAHTNDVK	RT	349	366	349	366	7	0.1296
214	MRGAHTNDVKQLTEAVQK	RT	357	374	357	374	3	0.1037
215	VKQLTEAVQKIATESIVI	RT	365	382	365	382	6	0.1633
216	QKIATESIVIWGKTPKFK	RT	373	390	373	390	24	0.1894
217	VIWGKTPKFKLPIQKETW	RT	381	398	381	398	3	0.0784
218	FKLPIQKETWEAWWTEYW	RT	389	406	389	406	16	0.1589
219	TWEAWWTEYWQATWIPEW	RT	397	414	397	414	5	0.1381
220	YWQATWIPEWEFVNRPPL	RT	405	422	405	422	8	0.0443
221	EWEFVNRPPLVKLWYQL	RT	413	429	413	429	3	0.0313
222	PPLVKLWYQLEKEPIVGA	RT	420	437	420	437	3	0.0949
223	QLEKEPIVGAETFYVDGA	RT	428	445	428	445	23	0.0949
224	GAETFYVDGAANRETKL	RT	436	452	436	452	27	0.0939
225	DGAANRETKLGKAGYV	RT	443	458	443	458	5	0.1081
226	ETKLGKAGYVTDRGRQKV	RT	449	466	449	466	5	0.1553
227	YVTDRGRQKVVSLTDTTNQK	RT	457	476	457	476	1	0.1778
228	VSLTDTTNQKTELQAIHL	RT	467	484	467	484	1	0.1607
229	QKTELQAIHLALQDSGL	RT	475	491	475	491	2	0.0776
230	IHLALQDSGLEVNIV	RT	482	496	482	496	3	0.0791
231	QDSGLEVNIVTDSQYAL	RT	487	503	487	503	13	0.0462
232	NIVTDSQYALGIIQA	RT	494	508	494	508	11	0.0327
233	SQYALGIIQAQPDKSESEL	RT	499	517	499	517	2	0.0792
234	AQPDKSESELVSQIIEQL	RT	508	525	508	525	5	0.1145
235	ELVSQIIEQLIKKEKVYL	RT	516	533	516	533	7	0.0892
236	QLIKKEKVYLAWVPAHK	RT	524	540	524	540	18	0.0420
237	VYLAWVPAHKGIGGNEQV	RT	531	548	531	548	15	0.0562
238	HKGIGGNEQVDKLVSAGI	RT	539	556	539	556	1	0.0930
239	QVDKLVSAGIRKVLFL	RT-Integrase	547	2	547	2	7	0.1171
240	SAGIRKVLFLDGIDKA	RT-Integrase	553	8	553	8	2	0.0997
241	VLFLDGIDKAQEEHEKYH	RT-Integrase	559	16	559	16	2	0.0967
242	KAQEEHEKYHSNWRAMA	Integrase	7	23	7	23	7	0.1086
243	KYHSNWRAMASDFNLPPV	Integrase	14	31	14	31	0	0.1284
244	MASDFNLPPVVAKEIVA	Integrase	22	38	22	38	18	0.1040
245	PPVVAKEIVASCDKCQLK	Integrase	29	46	29	46	3	0.0773
246	VASCDKCQLKGEAMHGQV	Integrase	37	54	37	54	0	0.0446
247	LKGEAMHGQVDCSPGIW	Integrase	45	61	45	61	0	0.0390
248	GQVDCSPGIWQLDCTHL	Integrase	52	68	52	68	0	0.0156
249	GIWQLDCTHLEGKIILVA	Integrase	59	76	59	76	5	0.0679
250	HLEGKIILVAVHVASGYI	Integrase	67	84	67	84	5	0.0606
251	VAVHVASGYIEAEVIPA	Integrase	75	91	75	91	1	0.0156
252	GYIEAEVIPAETGQETAY	Integrase	82	99	82	99	16	0.0497
253	PAETGQETAYFLLKLAGR	Integrase	90	107	90	107	14	0.0881
254	AYFLLKLAGRWPVKTIH	Integrase	98	114	98	114	3	0.1256
255	AGRWPVKTIHTDNGSNF	Integrase	105	121	105	121	6	0.1313
256	TIHTDNGSNFTSTTVKAA	Integrase	112	129	112	129	4	0.2066
257	NFTSTTVKAACWWAGIK	Integrase	120	136	120	136	5	0.1526
258	KAACWWAGIKQEFGIPY	Integrase	127	143	127	143	2	0.0591
259	GIKQEFGIPYNPQSQGVV	Integrase	134	151	134	151	7	0.0676
260	PYNPQSQGVVESMNKELK	Integrase	142	159	142	159	1	0.1318
261	VVESMNKELKKIIGQVR	Integrase	150	166	150	166	6	0.1551
262	ELKKIIGQVRDQAEHLK	Integrase	157	173	157	173	9	0.0544
263	QVRDQAEHLKTAVQMAVF	Integrase	164	181	164	181	16	0.0148
264	LKTAVQMAVFIHNFKRK	Integrase	172	188	172	188	22	0.0313
265	AVFIHNFKRKGGIGGYSA	Integrase	179	196	179	196	15	0.0350
266	RKGGIGGYSAGERIVDII	Integrase	187	204	187	204	9	0.0707
267	SAGERIVDIIATDIQTK	Integrase	195	211	195	211	5	0.1236
268	DIIATDIQTKELQKQITK	Integrase	202	219	202	219	8	0.1028
269	TKELQKQITKIQNFRVYY	Integrase	210	227	210	227	12	0.0699
270	TKIQNFRVYYRDSRDPLW	Integrase	218	235	218	235	17	0.1215
271	YYRDSRDPLWKGPAKLLW	Integrase	226	243	226	243	4	0.1061
272	LWKGPAKLLWKGEGAVVI	Integrase	234	251	234	251	0	0.0325
273	LWKGEGAVVIQDNSDIKV	Integrase	242	259	242	259	1	0.0331
274	VIQDNSDIKVVPRRKAKI	Integrase	250	267	250	267	4	0.0688
275	KVVPRRKAKIIRDYGKQM	Integrase	258	275	258	275	23	0.0451
276	KIIRDYGKQMAGDDCVA	Integrase	266	282	266	282	9	0.0313
277	KQMAGDDCVASRQDED	Integrase	273	288	273	288	1	0.0481
402	MENRWQVMIVWQVDRMRI	Vif	1	18	1	18	4	0.0497
403	IVWQVDRMRIRTWKSLVK	Vif	9	26	9	26	3	0.1233
404	RIRTWKSLVKHHMYISGK	Vif	17	34	17	34	13	0.3089
405	VKHHMYISGKAKGWFYRH	Vif	25	42	25	42	3	0.4463
406	GKAKGWFYRHHYESTHPR	Vif	33	50	33	50	2	0.4626
407	RHHYESTHPRISSEVHI	Vif	41	57	41	57	15	0.2443
408	HPRISSEVHIPLGDARLV	Vif	48	65	48	65	10	0.2477
409	HIPLGDARLVITTYWGL	Vif	56	72	56	72	7	0.2269
410	RLVITTYWGLHTGERDWHL	Vif	63	81	63	81	3	0.2077
411	LHTGERDWHLGGGVSIEW	Vif	72	89	72	89	3	0.1228
412	HLGGGVSIEWRKKRY	Vif	80	94	80	94	1	0.2094
413	VSIEWRKKRYSTQVDPDL	Vif	85	102	85	102	4	0.3137
414	RYSTQVDPDLADQLIHLY	Vif	93	110	93	110	9	0.2788
415	DLADQLIHLYYFDCF	Vif	101	115	101	115	12	0.2435
416	LIHLYYFDCFSESAIRNA	Vif	106	123	106	123	1	0.2303
417	CFSESAIRNAILGHIV	Vif	114	129	114	129	3	0.3678
418	IRNAILGHIVSPRCEYQA	Vif	120	137	120	137	4	0.4178
419	IVSPRCEYQAGHNKVGSL	Vif	128	145	128	145	2	0.2434
420	QAGHNKVGSLQYLALAAL	Vif	136	153	136	153	1	0.1304
421	SLQYLALAALITPKKIK	Vif	144	160	144	160	1	0.3090
422	AALITPKKIKPPLPSVTK	Vif	151	168	151	168	2	0.3229
423	IKPPLPSVTKLTEDRWNK	Vif	159	176	159	176	7	0.1638
424	TKLTEDRWNKPQKTKGHR	Vif	167	184	167	184	3	0.1977
425	NKPQKTKGHRGSHTMNGH	Vif	175	192	175	192	1	0.2007
278	MEQAPEDQGPQREPYNEW	Vpr	1	18	1	18	6	0.1927
279	GPQREPYNEWTLELLEEL	Vpr	9	26	9	26	12	0.1963
280	EWTLELLEELKNEAVRHF	Vpr	17	34	17	34	5	0.2071
281	ELKNEAVRHFPRIWLHSL	Vpr	25	42	25	42	38	0.3069
282	HFPRIWLHSLGQHIYETY	Vpr	33	50	33	50	11	0.2692
283	SLGQHIYETYGDTWAGV	Vpr	41	57	41	57	18	0.2215
284	ETYGDTWAGVEAIIRIL	Vpr	48	64	48	64	13	0.2046
285	AGVEAIIRILQQLFIHF	Vpr	55	72	55	71	11	0.1722
286	ILQQLFIHFRIGCQHSR	Vpr	63	80	63	79	4	0.1467
287	HFRIGCQHSRIGITQQRR	Vpr	71	88	70	87	2	0.2987
288	SRIGITQQRRARNGASRS	Vpr	79	96	78	95	2	0.3297
111	MEPVDPRLEPWKHPGSQPK	Tat	1	19	1	19	11	0.1090
112	PWKHPGSQPKTACTNCY	Tat	10	26	10	26	0	0.1688
113	QPKTACTNCYCKKCCFH	Tat	17	33	17	33	3	0.2314
114	NCYCKKCCFHCQVCFTTK	Tat	24	41	24	41	2	0.2677
115	FHCQVCFTTKGLGISYGR	Tat	32	49	32	49	25	0.2254
116	TKGLGISYGRKKRRQRRR	Tat	40	57	40	57	22	0.1163
117	GRKKRRQRRRAPQDSQTH	Tat	48	65	48	65	2	0.2582
118	RRAPQDSQTHQVSLSK	Tat	56	71	56	71	4	0.4399
119	SQTHQVSLSKQPASQPR	Tat	62	78	62	78	3	0.3594
120	LSKQPASQPRGDPTGPK	Tat	69	85	69	85	1	0.2573
121	QPRGDPTGPKESKKKVER	Tat	76	93	76	93	1	0.3250
122	PKESKKKVERETETDPVDQ	Tat	84	102	84	102	0	0.5644
94	MAGRSGDSDEELLKTVRL	Rev	1	18	1	18	2	0.1962
95	DEELLKTVRLIKFLY	Rev	9	23	9	23	18	0.2969
96	KTVRLIKFLYQSNPPPS	Rev	14	30	14	30	18	0.2827
97	FLYQSNPPPSPEGTRQAR	Rev	21	38	21	38	1	0.2229
98	PSPEGTRQARRNRRRRW	Rev	29	45	29	45	1	0.1279
99	QARRNRRRRWRERQRQIR	Rev	36	53	36	53	2	0.1578
100	RWRERQRQIRSISGWIL	Rev	44	60	44	60	5	0.4068
101	QIRSISGWILSTYLGRPA	Rev	51	68	51	68	0	0.5784
102	ILSTYLGRPAEPVPLQL	Rev	59	75	59	75	6	0.3694
103	RPAEPVPLQLPPLERL	Rev	66	81	66	81	12	0.2713
104	PLQLPPLERLTLDCNED	Rev	72	88	72	88	3	0.2085
105	ERLTLDCNEDCGTSGTQGV	Rev	79	97	79	97	2	0.1294
106	DCGTSGTQGVGSPQIL	Rev	88	103	88	103	1	0.1301
107	TQGVGSPQILVESPAVL	Rev	94	110	94	110	4	0.1817
108	QILVESPAVLESGTKEE	Rev	101	117	101	117	4	0.3771
123	MQSLQILAIVALVVAAII	Vpu	1	18	1	18	1	0.3943
124	IVALVVAAIIAIVVWSIV	Vpu	9	26	9	26	0	0.2953
125	IIAIVVWSIVFIEYRKIL	Vpu	17	34	17	34	4	0.2840
126	IVFIEYRKILRQKIDRL	Vpu	25	42	25	42	5	0.2510
127	ILRQRKIDRLIDRIRERA	Vpu	33	50	33	50	2	0.2906
128	RLIDRIRERAEDSGNESE	Vpu	41	58	41	58	3	0.2597
129	RAEDSGNESEGDQEELSA	Vpu	49	66	49	66	0	0.1991
130	SEDGQEELSALVEMGHHA	Vpu	54	75	57	74	7	0.2603
131	SALVEMGHHAPWDVDDL	Vpu	66	82	65	81	4	0.2736
289	MRVKGIRKNYQHLWRW	gp160	1	13	1	16	3	0.4815
290	RKNYQHLWRWGTMLLGML	gp160	4	25	7	24	2	0.4347
291	RWGTMLLGMLMICSAA	gp160	16	31	15	30	0	0.3013
292	LGMLMICSAAEQLWVTVY	gp160	22	39	21	38	5	0.3125
293	AAEQLWVTVYYGVPVWK	gp160	30	46	29	45	18	0.2414
294	TVYYGVPVWKEATTTLF	gp160	37	53	36	52	34	0.0677
295	VWKEATTTLFCASDACAY	gp160	44	61	43	60	18	0.1035
296	LFCASDACAYDTEVHNVW	gp160	52	69	51	68	13	0.1935
297	AYDTEVHNVWATHACV	gp160	60	75	59	74	5	0.1921
298	HNVWATHACVPTDPNPQEV	gp160	66	84	65	83	7	0.1034
299	VPTDPNPQEVVLENV	gp160	75	89	74	88	13	0.3185
300	NPQEVVLENVTENFNMWK	gp160	80	97	79	96	2	0.3438
301	NVTENFNMWKNNMVEQMH	gp160	88	105	87	104	3	0.1778
302	WKNNMVEQMHEDIISLW	gp160	96	112	95	111	5	0.1400
303	QMHEDIISLWDQSLKPCV	gp160	103	120	102	119	1	0.0783
304	LWDQSLKPCVKLTPLCV	gp160	111	127	110	126	4	0.0693
305	PCVKLTPLCVTLNCTDL	gp160	118	134	117	133	4	0.3004
306	LCVTLNCTDLNNNTNTTS	gp160	125	142	124	141	0	0.8068
307	DLNNNTNTTSSSGEKMEK	gp160	133	151	132	149	0	1.1826
308	TSSSGEKMEKGEIKNCSF	gp160	141	159	140	157	0	1.1804
309	EKGEIKNCSFNITTSIR	gp160	150	166	148	164	0	0.5896
310	CSFNITTSIRDKVQKEYA	gp160	157	174	155	172	2	0.6408
311	IRDKVQKEYALFYKLDVV	gp160	165	182	163	180	7	0.6826
312	YALFYKLDVVPIDNDNTSY	gp160	173	191	171	189	0	0.5924
313	VPIDNDNTSYRLISCNTSV	gp160	182	200	180	198	0	0.5724
314	YRLISCNTSVITQACPKV	gp160	191	208	189	206	23	0.2456
315	SVITQACPKVSFEPIPIH	gp160	199	216	197	214	16	0.1224
316	KVSFEPIPIHYCAPAGFA	gp160	207	224	205	222	6	0.1404
317	IHYCAPAGFAILKCNDKK	gp160	215	232	213	230	10	0.2655
318	FAILKCNDKKFNGTGPCTNV	gp160	223	242	221	240	1	0.3557
319	FNGTGPGCTNVSTVQCTH	gp160	233	249	231	247	1	0.1974
320	TNVSTVQCTHGIRPVV	gp160	240	255	238	253	3	0.1241
321	QCTHGIRPVVSTQLLL	gp160	246	261	244	259	10	0.0486
322	RPVVSTQLLLNGSLA	gp160	252	266	250	264	6	0.0648
323	TQLLLNGSLAEEEVVIR	gp160	257	273	255	271	1	0.1540
324	SLAEEEVVIRSENFTDNA	gp160	264	281	262	279	1	0.3204
325	IRSENFTDNAKTIIVQL	gp160	272	288	270	286	5	0.3106
326	DNAKTIIVQLNESVEI	gp160	279	294	277	292	3	0.4665
327	IVQLNESVEINCTRPNNNTR	gp160	285	304	283	302	4	0.3827
328	NCTRPNNNTRKSIHI	gp160	295	309	293	307	9	0.4229
329	NNNTRKSIHIGPGRAFY	gp160	300	318	298	314	5	0.5049
330	IHIGPGRAFYTTGEII	gp160	309	324	305	320	7	0.5479
331	RAFYTTGEIIGDIRQAH	gp160	315	330	311	327	1	0.5000
332	EIIGDIRQAHCNISTAKW	gp160	321	338	318	335	2	0.4972
333	AHCNISTAKWNNTLKQIV	gp160	329	346	326	343	2	0.6883
334	KWNNTLKQIVIKLREQF	gp160	337	353	334	350	0	0.6918
335	QIVIKLREQFGNKTIVF	gp160	344	361	341	357	0	0.5150
336	EQFGNKTIVFNQSSGGDPEI	gp160	351	371	348	367	1	0.3782
337	NQSSGGDPEIVMHSF	gp160	362	376	358	372	2	0.3259
338	GDPEIVMHSFNCGGEFFY	gp160	367	384	363	380	12	0.1965
339	SFNCGGEFFYCNTTQLF	gp160	375	391	371	387	10	0.2500
340	FFYCNTTQLFNSTWNSTN	gp160	382	400	378	395	4	0.8209
341	LFNSTWNSTNTEGSNNTDTI	gp160	390	414	386	405	1	1.0905
342	TEGSNNTDTITLPCRIK	gp160	402	421	396	412	0	0.8790
343	DTITLPCRIKQIINMW	gp160	412	427	403	418	8	0.2974
344	CRIKQIINMWQEVGKAMY	gp160	418	435	409	426	4	0.1772
345	MWQEVGKAMYAPPIRGQI	gp160	426	443	417	434	2	0.2299
346	MYAPPIRGQIRCSSNI	gp160	434	449	425	440	2	0.2633
347	RGQIRCSSNITGLLLTR	gp160	440	456	431	447	4	0.2828
348	SNITGLLLTRDGGNNNNT	gp160	447	464	438	455	3	0.5864
349	TRDGGNNNNTTEIFR	gp160	455	469	446	460	1	0.7425
350	NNNNTTEIFRPGGGDMR	gp160	460	476	451	467	0	0.7235
351	IFRPGGGDMRDNWRSELY	gp160	467	484	458	475	1	0.1739
352	MRDNWRSELYKYKVVKI	gp160	475	491	466	482	1	0.1524
353	ELYKYKVVKIEPLGVA	gp160	482	497	473	488	2	0.1762
354	VVKIEPLGVAPTKAKRRV	gp160	488	505	479	496	3	0.1944
355	VAPTKAKRRVVQREKRAV	gp160	496	513	487	504	3	0.1244
356	RVVQREKRAVGIGAMFL	gp160	504	520	495	511	2	0.2176
357	RAVGIGAMFLGFLGAA	gp160	511	526	502	517	0	0.2621
358	AMFLGFLGAAGSTMGAA	gp160	517	533	508	524	1	0.1249
359	GAAGSTMGAASMTLTVQA	gp160	524	541	515	532	0	0.1687
360	AASMTLTVQARQLLSGIV	gp160	532	549	523	540	2	0.2151
361	QARQLLSGIVQQQNNLLR	gp160	540	557	531	548	0	0.1213
362	IVQQQNNLLRAIEAQQHL	gp160	548	565	539	556	15	0.1003
363	LRAIEAQQHLQLTVWGI	gp160	556	573	547	563	13	0.0851
364	HLQLTVWGIKQLQARVL	gp160	565	581	555	571	3	0.0782
365	GIKQLQARVLAVERYLK	gp160	572	588	562	578	8	0.1338
366	RVLAVERYLKDQQLLGIW	gp160	579	596	569	586	22	0.1471
367	LKDQQLLGIWGCSGKLI	gp160	587	603	577	593	0	0.1284
368	GIWGCSGKLICTTAVPW	gp160	594	610	584	600	0	0.1415
369	KLICTTAVPWNASWSNK	gp160	601	617	591	607	3	0.1846
370	VPWNASWSNKSLDQIW	gp160	608	623	598	613	1	0.3223
371	WSNKSLDQIWNNMTWMEW	gp160	614	631	604	621	7	0.3406
372	IWNNMTWMEWEREIDNY	gp160	622	638	612	628	5	0.3024
373	MEWEREIDNYTSLIYTLI	gp160	629	646	619	636	0	0.5025
374	NYTSLIYTLIEESQNQQEK	gp160	637	655	627	645	0	0.4359
375	IEESQNQQEKNEQELLEL	gp160	646	663	636	653	1	0.3035
376	EKNEQELLELDKWASLW	gp160	654	670	644	660	2	0.2411
377	LELDKWASLWNWFDITNW	gp160	661	678	651	668	2	0.3364
378	LWNWFDITNWLWYIKIFI	gp160	669	686	659	676	2	0.2459
379	LWNWYIKIFIMIVGGLV	gp160	677	693	667	683	1	0.2002
380	IFIMIVGGLVGLRIVFAV	gp160	684	701	674	691	1	0.2109
381	LVGLRIVFAVLSIVNRVR	gp160	692	709	682	699	1	0.2516
382	AVLSIVNRVRQGYSPLSF	gp160	700	717	690	707	10	0.2485
383	VRQGYSPLSFQTRLPAPR	gp160	708	725	698	712	5	0.2848
384	SFQTRLPAPRGPDRPEGI	gp160	716	733	703	720