Found 17 matching records:
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Subtype | B | |
Species (MHC/HLA) | (A*29) | |
Immunogen | HIV-1 infection | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | acute/early infection |
Dinges2010 Warren L. Dinges, Julia Richardt, David Friedrich, Emilie Jalbert, Yi Liu, Claire E. Stevens, Janine Maenza, Ann C. Collier, Daniel E. Geraghty, Jeremy Smith, Zoe Moodie, James I. Mullins, M. Juliana McElrath, and Helen Horton. Virus-Specific CD8+ T-Cell Responses Better Define HIV Disease Progression than HLA Genotype. J. Virol., 84(9):4461-4468, May 2010. PubMed ID: 20147397. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Species (MHC/HLA) | human(A*29) | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, optimal epitope, chronic infection |
Pereyra2014 Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tienho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, and Bruce D. Walker. HIV Control Is Mediated in Part by CD8+ T-Cell Targeting of Specific Epitopes. J. Virol., 88(22):12937-12948, Nov 2014. PubMed ID: 25165115. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | ( B consensus) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Subtype | B | |
Species (MHC/HLA) | human(A29) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | A28, A29, B14, B44, Cw8 | |
Country | United States | |
Experimental methods | Chromium-release assay, Cytokine production, Flow cytometric T-cell cytokine assay, Intracellular cytokine staining | |
Keywords | assay or method development, memory cells, characterizing CD8+ T cells |
Lichterfeld2004b Mathias Lichterfeld, Xu G. Yu, Michael T. Waring, Stanley K. Mui, Mary N. Johnston, Daniel Cohen, Marylyn M. Addo, John Zaunders, Galit Alter, Eunice Pae, Daryld Strick, Todd M. Allen, Eric S. Rosenberg, Bruce D. Walker, and Marcus Altfeld. HIV-1-Specific Cytotoxicity Is Preferentially Mediated by a Subset of CD8+ T Cells Producing both Interferon-gamma and Tumor Necrosis Factor-alpha. Blood, 104(2):487-394, 15 Jul 2004. PubMed ID: 15059848. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp120(213-221 SF2) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Species (MHC/HLA) | human(A29) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | AC02: A*02:01, A*32:01, B*35, B*44, C*04:01, C*05 | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Proliferation | |
Keywords | HAART, ART, acute/early infection, novel epitope |
Altfeld2001b M. Altfeld, E. S. Rosenberg, R. Shankarappa, J. S. Mukherjee, F. M. Hecht, R. L. Eldridge, M. M. Addo, S. H. Poon, M. N. Phillips, G. K. Robbins, P. E. Sax, S. Boswell, J. O. Kahn, C. Brander, P. J. Goulder, J. A. Levy, J. I. Mullins, and B. D. Walker. Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection. J. Exp. Med., 193(2):169-80, 15 Jan 2001. URL: http://www.jem.org/cgi/content/full/193/2/169. PubMed ID: 11148221. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp120(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Species (MHC/HLA) | human(A29) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | 1168: A*02:01, A29, B44, B60, C*16, Cw3 | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | binding affinity, acute/early infection, early-expressed proteins |
Cao2003 Jianhong Cao, John McNevin, Sarah Holte, Lisa Fink, Lawrence Corey, and M. Juliana McElrath. Comprehensive Analysis of Human Immunodeficiency Virus Type 1 (HIV-1)-Specific Gamma Interferon-Secreting CD8+ T Cells in Primary HIV-1 Infection. J. Virol., 77(12):6867-6878, Jun 2003. PubMed ID: 12768006. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp120 | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9(gp120) | |
Subtype | B | |
Species (MHC/HLA) | human(A29) | |
Immunogen | HIV-1 infection | |
Country | China | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | chronic infection |
Zhai2008 Song Zhai, Yan Zhuang, Yang Song, Shu Li, Dedong Huang, Wenzhen Kang, Xinhong Li, Qi Liao, Yanhou Liu, Zhongfang Zhao, Yichen Lu, and Yongtao Sun. HIV-1-Specific Cytotoxic T Lymphocyte (CTL) Responses Against Immunodominant Optimal Epitopes Slow the Progression of AIDS in China. Curr. HIV Res., 6(4):335-350, Jun 2008. PubMed ID: 18691032. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | ( LAI) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*29:02) | |
Immunogen | ||
Experimental methods | ||
Keywords | optimal epitope, A-list |
Altfeld2000c M. Altfeld. Personal communication, 2000. Show all entries for this paper.
Llano2019 Anuska Llano, Samandhy Cedeño, Sandra Silva Arrieta, and Christian Brander. The 2019 Optimal HIV CTL Epitopes Update: Growing Diversity in Epitope Length and HLA restriction. 2019. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Subtype | B | |
Species (MHC/HLA) | human(A*29:02) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | 11439: A*01:01, A*29:02, B*38:01, B*44:03, C*12:03, C*16:01; 41325: A*29:02, A*32:01, B*35:01, B*44:03, C*04:01, C*16:01 | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | acute/early infection |
Kunwar2013 Pratima Kunwar, Natalie Hawkins, Warren L. Dinges, Yi Liu, Erin E. Gabriel, David A. Swan, Claire E. Stevens, Janine Maenza, Ann C. Collier, James I. Mullins, Tomer Hertz, Xuesong Yu, and Helen Horton. Superior Control of HIV-1 Replication by CD8+ T Cells Targeting Conserved Epitopes: Implications for HIV Vaccine Design. PLoS One, 8(5):e64405, 2013. PubMed ID: 23741326. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160(207-215 BORI, WEAU) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Show epitope variants | ||
Epitope Name | gp160 SY9 | |
Subtype | B | |
Species (MHC/HLA) | human(A*29:02) | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | WEAU: A01, A29, B08, B44; BORI: A02, A29, B14, B44 | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Chromium-release assay | |
Keywords | dynamics, immunodominance, escape, acute/early infection, autologous responses, optimal epitope |
Jones2004 Nicola A. Jones, Xiping Wei, Darren R. Flower, MaiLee Wong, Franziska Michor, Michael S. Saag, Beatrice H. Hahn, Martin A. Nowak, George M. Shaw, and Persephone Borrow. Determinants of Human Immunodeficiency Virus Type 1 Escape from the Primary CD8+ Cytotoxic T Lymphocyte Response. J. Exp. Med., 200(10):1243-1256, 15 Nov 2004. PubMed ID: 15545352. Show all entries for this paper.
Yang2019 Yiding Yang and Vitaly V. Ganusov. Defining Kinetic Properties of HIV-Specific CD8+ T-Cell Responses in Acute Infection. Microorganisms, 7(3), 4 Mar 2019. PubMed ID: 30836625. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Species (MHC/HLA) | human(B*14) | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, optimal epitope, chronic infection |
Pereyra2014 Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tienho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, and Bruce D. Walker. HIV Control Is Mediated in Part by CD8+ T-Cell Targeting of Specific Epitopes. J. Virol., 88(22):12937-12948, Nov 2014. PubMed ID: 25165115. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Species (MHC/HLA) | human(B*58:01) | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, optimal epitope, chronic infection |
Pereyra2014 Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tienho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, and Bruce D. Walker. HIV Control Is Mediated in Part by CD8+ T-Cell Targeting of Specific Epitopes. J. Virol., 88(22):12937-12948, Nov 2014. PubMed ID: 25165115. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Species (MHC/HLA) | human(B*82) | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, optimal epitope, chronic infection |
Pereyra2014 Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tienho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, and Bruce D. Walker. HIV Control Is Mediated in Part by CD8+ T-Cell Targeting of Specific Epitopes. J. Virol., 88(22):12937-12948, Nov 2014. PubMed ID: 25165115. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | SY9 | |
Species (MHC/HLA) | human(C*18) | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Flow cytometric T-cell cytokine assay | |
Keywords | rate of progression, optimal epitope, chronic infection |
Pereyra2014 Florencia Pereyra, David Heckerman, Jonathan M. Carlson, Carl Kadie, Damien Z. Soghoian, Daniel Karel, Ariel Goldenthal, Oliver B. Davis, Charles E. DeZiel, Tienho Lin, Jian Peng, Alicja Piechocka, Mary Carrington, and Bruce D. Walker. HIV Control Is Mediated in Part by CD8+ T-Cell Targeting of Specific Epitopes. J. Virol., 88(22):12937-12948, Nov 2014. PubMed ID: 25165115. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160 | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Epitope Name | A29-SY9 | |
Species (MHC/HLA) | human | |
Immunogen | HIV-1 infection | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords | immunodominance, acute/early infection, chronic infection |
Streeck2009a Hendrik Streeck, Jonathan S. Jolin, Ying Qi, Bader Yassine-Diab, Randall C. Johnson, Douglas S. Kwon, Marylyn M. Addo, Chanson Brumme, Jean-Pierre Routy, Susan Little, Heiko K. Jessen, Anthony D. Kelleher, Frederick M. Hecht, Rafick-Pierre Sekaly, Eric S. Rosenberg, Bruce D. Walker, Mary Carrington, and Marcus Altfeld. Human Immunodeficiency Virus Type 1-Specific CD8+ T-Cell Responses during Primary Infection Are Major Determinants of the Viral Set Point and Loss of CD4+ T Cells. J. Virol., 83(15):7641-7648, Aug 2009. PubMed ID: 19458000. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160(209-217) | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Species (MHC/HLA) | human | |
Immunogen | HIV-1 infection | |
Patient MHC/HLA | A*29:02, B*14:02; A*29:02, B*08:01, B*44:03 | |
Experimental methods | CD8 T-cell Elispot - IFNγ, HLA binding | |
Keywords | HAART, ART, escape, viral fitness and/or reversion |
Asquith2006 Becca Asquith, Charles T. T. Edwards, Marc Lipsitch, and Angela R. McLean. Inefficient Cytotoxic T Lymphocyte-Mediated Killing of HIV-1-Infected Cells In Vivo. PLoS Biol., 4(4):e90, Apr 2006. PubMed ID: 16515366. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | Env | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Subtype | B, D | |
Species (MHC/HLA) | human, mouse | |
Immunogen | HIV-1 infection | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ, Cytokine production | |
Keywords | subtype comparisons, epitope processing, optimal epitope |
Zhan2007 Xiaoyan Zhan, Julia L. Hurwitz, Scott A. Brown, and Karen S. Slobod. HIV-1 Envelope T Cell Epitope ``Hotspots'' among Mice and Humans and among CD4+ and CD8+ T Cell Subpopulations. AIDS Res. Hum. Retroviruses, 23(3):471-476, Mar 2007. PubMed ID: 17411381. Show all entries for this paper.
Download this epitope record as JSON.
HXB2 Location | Env(209-217) gp120(209-217) DNA(6849..6875) |
Env Epitope Map |
---|---|---|
Author Location | gp160 | |
Epitope |
SFEPIPIHY
|
Epitope Alignment
|
Species (MHC/HLA) | human | |
Immunogen | HIV-1 infection, in vitro stimulation or selection | |
Country | United States | |
Experimental methods | CD8 T-cell Elispot - IFNγ | |
Keywords |
Garrison2007 Keith E. Garrison, R. Brad Jones, Duncan A. Meiklejohn, Naveed Anwar, Lishomwa C. Ndhlovu, Joan M. Chapman, Ann L. Erickson, Ashish Agrawal, Gerald Spotts, Frederick M. Hecht, Seth Rakoff-Nahoum, Jack Lenz, Mario A. Ostrowski, and Douglas F. Nixon. T Cell Responses to Human Endogenous Retroviruses in HIV-1 Infection. PLoS Pathog., 3(11):e165, Nov 2007. PubMed ID: 17997601. Show all entries for this paper.
This is a legacy search page. It is deprecated, will receive no more updates, and will eventually be removed. Please use the new search pages.