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LOCUS HIVU50801 636 bp DNA linear VRL 09-MAY-1996
DEFINITION Human immunodeficiency virus type 1 GP120 gene, V1 to V5 region,
partial cds
ACCESSION U50801
VERSION U50801.1 GI:1314489
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 636)
Show all sequences for reference 1
AUTHORS Zhu,T., Wang,N., Carr,A., Nam,D.S., Moor-Jankowski,R., Cooper,D.A.
and Ho,D.D.
TITLE Genetic characterization of human immunodeficiency virus type 1 in
blood and genital secretions: evidence for viral
compartmentalization and selection during sexual transmission
JOURNAL J. Virol. 70 (5), 3098-3107 (1996)
PUBMED 8627789
REFERENCE 2 (bases 1 to 636)
Show all sequences for reference 2
AUTHORS Zhu,T., Wang,N., Car,A., Nam,D.S., Moor-Jankowski,R., Cooper,D.A.
and Ho,D.D.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-1996) Tuofu Zhu, The Aaron Diamond AIDS Research
Center for City of New York, 455 First Avenue, 7th Floor, New York,
NY 10016, USA
COMMENT DNA extracted from seminal plasma of a symptomatic male AIDS
patient, AD38. Sequences spanned by primers PE1 and P2 from the
gp120 gene were expanded by PCR amplification. A second round of
PCR amplification expanded V1-V2 sequences (using inner primers P1
and P10) and V3 (using inner primers P5 and PV3). AD38SP6 has been
characterized as non-syncytium inducing (NSI).
FEATURES Location/Qualifiers
source 1..636
/organism="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/strain="AD38SP6"
/db_xref="taxon:11676"
CDS <1..>636
/codon_start="1"
/transl_table="1"
/product="GP120, V1 to V5 region"
/protein_id="AAC54792.1"
/db_xref="GI:1314490"
/translation="VSTQLLLNGSLAEEEIVIRSANFSDSTKSIIVQLKEPVEINCTR
PNNNTIKGIHIGPGRAFYATGQIVGDIRQAHCNISKTKWDNTLQQIVSKLREQFNKTI
IFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWTWNTTEGLNNTEGNITLPCRIK
QIVNMWQEVGKAMYAPPIEGLIRCSSNITGLILTRDGGGNNSTNETFRPGGG"
BASE COUNT 260 a 101 c 127 g 148 t
ORIGIN
1 gtatcaactc aattgctgtt aaatggcagc ctagcagaag aagagatagt aattagatct
61 gccaatttct cagacagtac taaaagcata atagtacagc tgaaagaacc agtagaaatt
121 aattgtacaa gacccaacaa caatacaata aaaggtatac atataggacc agggagagca
181 ttttatgcaa caggacaaat agtaggagat ataagacaag cacattgtaa cattagtaaa
241 acaaaatggg ataacacttt acaacagata gttagcaaac taagagaaca atttaataaa
301 acaataatct ttaatcaatc ctcaggaggg gacccagaaa ttgtaatgca cagttttaat
361 tgtagagggg aatttttcta ctgtaataca acacaactgt ttaatagtac ttggacttgg
421 aatactactg aagggttaaa caacacagaa ggaaatatca cactcccatg cagaataaaa
481 caaattgtaa acatgtggca ggaagtagga aaagcaatgt atgctcctcc tatcgaagga
541 ctaattagat gttcatcaaa tattacaggg ctgatattga caagagatgg tggagggaac
601 aatagcacga atgagacctt cagacctgga ggagga
//
last modified: Tue May 31 10:56 2022