HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HIV1U35935		     658 bp    DNA     linear	VRL 25-APR-1996
DEFINITION  Human immunodeficiency virus type 1 sample P1.9-9, envelope
	    glycoprotein (env) gene, C2-V5, partial cds
ACCESSION   U35935
VERSION     U35935.1 GI:1144688
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 658)
            Show all sequences for reference 1
  AUTHORS   McDonald,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-1995) D. McDonald, Theoretical Biology, T-10, Los
	    Alamos National Lab, Los Alamos, NM 87545, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Wolinsky,S.M., Korber,B.T., Neumann,A.U., Daniels,M.,
	    Kunstman,K.J., Whetsell,A.J., Furtado,M.R., Cao,Y., Ho,D.D.,
	    Safrit,J.T. and Koup,R.A.
  TITLE     Adaptive evolution of human immunodeficiency virus-type 1 during
	    the natural course of infection
  JOURNAL   Science 272 (5261), 537-542 (1996)
  PUBMED    8614801
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kils-Hutten,L., Cheynier,R., Wain-Hobson,S. and Meyerhans,A.
  TITLE     Phylogenetic reconstruction of intrapatient evolution of human
	    immunodeficiency virus type 1: predominance of drift and purifying
	    selection.
  JOURNAL   J Gen Virol. 2001 Jul;82(Pt 7):1621-7.
  PUBMED    11413373
COMMENT     Sequence related to longitudinal study of HIV genetic variation and
	    its relation to rate of disease progression. These patients are
	    from the Chicago MACS cohort. In the study, P1 & P2 were rapid
	    progressors, P3 & P4 normal progressors, and P5 & P6
	    non-progressors. Their estimated years of seroconversion are as
	    follows: for P1, 1985, for P2, 1985, for P3, 1986, for P4, 1986,
	    for P5, 1985, and for P6, 1984. In the sample number, Px.y-z, x
	    stands for the patient number, y is the number of months after the
	    estimated date of seroconversion, and z is the clone number. This
	    patient, P1, is a rapid progressor. P1 samples available are
	    (post-seroconversion dates indicated): 9 months (11 clones), 13
	    months (8 clones), 16 months (8 clones), 22 months (8 clones), 26
	    months (7 clones).
FEATURES             Location/Qualifiers
     source	     1..658
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="unassigned DNA"
		     /isolate="sample P1.9-9"
		     /db_xref="taxon:11676"
		     /note="PCR amplified proviral DNA from peripheral blood
		     mononuclear cells"
     gene	     1..461
		     /gene="env"
     CDS	     <1..461
		     /gene="env"
		     /note="C2-V5"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAA97650.1"
		     /db_xref="GI:1144689"
		     /translation="GSLAEGEVVIRSENFTDNVKTIIVQLNESIEINCTRPNNNTRKS
		     IQIGPGRAFYTTGEIIGDIRQAHCNLSRAKWDNTLEQIVRKLREQFKNNTIVFSQSSG
		     GDPEIVTHSFNCGGEFSTVIQHSCLIVLGRLMVLGMILQGQMILSHSRAE"
BASE COUNT	257 a	  97 c	  148 g    156 t
ORIGIN
       1 atggtagtct agcagaagga gaggtagtaa ttagatctga aaatttcacg gacaatgtta 
      61 aaaccataat agtacagctg aatgaatcta tagaaattaa ttgtacaaga cccaacaaca 
     121 atacaagaaa aagtatacag ataggaccgg ggagagcatt ttatacaaca ggagaaataa 
     181 taggagatat aagacaagca cattgtaacc ttagtagagc aaaatgggat aacactttgg 
     241 aacaaatagt tagaaaatta agagaacaat ttaagaataa cacaatagtc tttagccaat 
     301 cctcaggagg ggacccagaa attgtaacgc acagttttaa ttgtggaggg gaattttcta 
     361 ctgtaattca acacagctgt ttaatagtac ttggccgtct aatggtacta ggaatgatac 
     421 tacagggtca aatgatacta tcacactccc gtgcagaata aaacaaatta taaacaggtg 
     481 gcagggagta ggaaaagcga tgtatgcccc tcccatcaga ggacaaatta gatgttcatc 
     541 aaatattaca ggactactat taacaagaga tggtggtgat aatgggagcg ggtccgagat 
     601 cttcagacct ggaggaggag atatgaggga caattggaga agtgaattat ataaatat
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.