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LOCUS HIV1U35935 658 bp DNA linear VRL 25-APR-1996
DEFINITION Human immunodeficiency virus type 1 sample P1.9-9, envelope
glycoprotein (env) gene, C2-V5, partial cds
ACCESSION U35935
VERSION U35935.1 GI:1144688
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 658)
Show all sequences for reference 1
AUTHORS McDonald,D.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-1995) D. McDonald, Theoretical Biology, T-10, Los
Alamos National Lab, Los Alamos, NM 87545, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Wolinsky,S.M., Korber,B.T., Neumann,A.U., Daniels,M.,
Kunstman,K.J., Whetsell,A.J., Furtado,M.R., Cao,Y., Ho,D.D.,
Safrit,J.T. and Koup,R.A.
TITLE Adaptive evolution of human immunodeficiency virus-type 1 during
the natural course of infection
JOURNAL Science 272 (5261), 537-542 (1996)
PUBMED 8614801
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kils-Hutten,L., Cheynier,R., Wain-Hobson,S. and Meyerhans,A.
TITLE Phylogenetic reconstruction of intrapatient evolution of human
immunodeficiency virus type 1: predominance of drift and purifying
selection.
JOURNAL J Gen Virol. 2001 Jul;82(Pt 7):1621-7.
PUBMED 11413373
COMMENT Sequence related to longitudinal study of HIV genetic variation and
its relation to rate of disease progression. These patients are
from the Chicago MACS cohort. In the study, P1 & P2 were rapid
progressors, P3 & P4 normal progressors, and P5 & P6
non-progressors. Their estimated years of seroconversion are as
follows: for P1, 1985, for P2, 1985, for P3, 1986, for P4, 1986,
for P5, 1985, and for P6, 1984. In the sample number, Px.y-z, x
stands for the patient number, y is the number of months after the
estimated date of seroconversion, and z is the clone number. This
patient, P1, is a rapid progressor. P1 samples available are
(post-seroconversion dates indicated): 9 months (11 clones), 13
months (8 clones), 16 months (8 clones), 22 months (8 clones), 26
months (7 clones).
FEATURES Location/Qualifiers
source 1..658
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="unassigned DNA"
/isolate="sample P1.9-9"
/db_xref="taxon:11676"
/note="PCR amplified proviral DNA from peripheral blood
mononuclear cells"
gene 1..461
/gene="env"
CDS <1..461
/gene="env"
/note="C2-V5"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAA97650.1"
/db_xref="GI:1144689"
/translation="GSLAEGEVVIRSENFTDNVKTIIVQLNESIEINCTRPNNNTRKS
IQIGPGRAFYTTGEIIGDIRQAHCNLSRAKWDNTLEQIVRKLREQFKNNTIVFSQSSG
GDPEIVTHSFNCGGEFSTVIQHSCLIVLGRLMVLGMILQGQMILSHSRAE"
BASE COUNT 257 a 97 c 148 g 156 t
ORIGIN
1 atggtagtct agcagaagga gaggtagtaa ttagatctga aaatttcacg gacaatgtta
61 aaaccataat agtacagctg aatgaatcta tagaaattaa ttgtacaaga cccaacaaca
121 atacaagaaa aagtatacag ataggaccgg ggagagcatt ttatacaaca ggagaaataa
181 taggagatat aagacaagca cattgtaacc ttagtagagc aaaatgggat aacactttgg
241 aacaaatagt tagaaaatta agagaacaat ttaagaataa cacaatagtc tttagccaat
301 cctcaggagg ggacccagaa attgtaacgc acagttttaa ttgtggaggg gaattttcta
361 ctgtaattca acacagctgt ttaatagtac ttggccgtct aatggtacta ggaatgatac
421 tacagggtca aatgatacta tcacactccc gtgcagaata aaacaaatta taaacaggtg
481 gcagggagta ggaaaagcga tgtatgcccc tcccatcaga ggacaaatta gatgttcatc
541 aaatattaca ggactactat taacaagaga tggtggtgat aatgggagcg ggtccgagat
601 cttcagacct ggaggaggag atatgaggga caattggaga agtgaattat ataaatat
//
last modified: Tue May 31 10:56 2022