View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS HIV1U23668 621 bp DNA linear VRL 27-AUG-1996
DEFINITION Human immunodeficiency virus type 1 patient 725 sample 1985 clone
12PRE from USA, envelope glycoprotein (env) gene, V3-V5 region,
partial cds
ACCESSION U23668
VERSION U23668.1 GI:799063
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 621)
Show all sequences for reference 1
AUTHORS Shpaer,E.G., Delwart,E.L., Kuiken,C.L., Goudsmit,J., Bachmann,M.H.
and Mullins,J.I.
TITLE Conserved V3 loop sequences and transmission of human
immunodeficiency virus type 1
JOURNAL AIDS Res. Hum. Retroviruses 10 (12), 1679-1684 (1994)
PUBMED 7888227
REFERENCE 2 (bases 1 to 621)
Show all sequences for reference 2
AUTHORS Delwart,E.L., Busch,M.P., Kalish,M.L., Mosley,J.W. and Mullins,J.I.
TITLE Rapid molecular epidemiology of human immunodeficiency virus
transmission
JOURNAL AIDS Res. Hum. Retroviruses 11 (9), 1081-1093 (1995)
PUBMED 8554905
REFERENCE 3 (bases 1 to 621)
Show all sequences for reference 3
AUTHORS Shpaer,E.G.
TITLE Direct Submission
JOURNAL Submitted (28-MAR-1995) Eugene G. Shpaer, Applied Biosystems,
Perkin-Elmer, 850 Lincoln Centre Dr., Foster City, CA 94404, USA
COMMENT Sample was collected close to the time of seroconversion. NCBI gi:
799063
FEATURES Location/Qualifiers
source 1..621
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="725 sample 1985"
/db_xref="taxon:11676"
/clone="12PRE"
gene 1..621
/gene="env"
CDS <1..>621
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein, V3-V5 region"
/protein_id="AAB06649.1"
/db_xref="GI:799064"
/translation="EEEVVIRSDNFSDNAKTIIVQLNTPVEINCTRPNNNTRKSIPIG
PGRAFYTTGDIIGDIRQAHCNISKDDWNNTLKQIVTNLRDQFGNKTIVFNRSSGGDPE
IVMHSFNCGGEFFYCNSTQLFNSTWPTNSTWNNNSTGNMTKGIITLPCRIKQIINMWQ
EVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNSTNGTTEIFRPGGGD"
BASE COUNT 244 a 102 c 125 g 150 t
ORIGIN
1 gaagaagagg tagtaattag atctgacaat ttctcagaca atgctaaaac cataatagta
61 cagctgaaca cacctgtaga aattaattgt acaagaccca acaacaatac aagaaaaagt
121 atacctatag gaccagggag agcattttat acaacaggag atataatagg agatataagg
181 caagcacact gtaacattag taaagacgat tggaataaca ctttaaaaca gatagttaca
241 aatttaagag accaatttgg gaataaaaca atagtcttta atcgatcctc aggaggggac
301 ccagaaattg taatgcacag ttttaattgt ggaggggaat ttttctactg taattcaaca
361 caactgttta atagtacttg gcctactaat agtacttgga ataataatag tactgggaat
421 atgactaaag ggattatcac actcccatgc agaataaaac aaattataaa tatgtggcag
481 gaagtaggaa aagcaatgta tgcccctccc atccgaggac aaattaaatg ttcatcaaat
541 attacagggc tgctattaac aagagatggt ggcaatagca ctaacgggac caccgagatc
601 ttcagacctg gagggggaga t
//
last modified: Tue May 31 10:56 2022