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LOCUS	    KJ415295		     882 bp    RNA     linear	SYN 22-APR-2014
DEFINITION  Simian-Human immunodeficiency virus isolate IK98-D77 integrase
	    gene, partial cds
ACCESSION   KJ415295
VERSION     KJ415295.1 GI:612341181
KEYWORDS    .
SOURCE	    Simian-Human immunodeficiency virus
  ORGANISM  Simian-Human immunodeficiency virus Viruses; Retro-transcribing
	    viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
	    lentivirus group; unclassified Primate lentivirus group
REFERENCE   1 (bases 1 to 882)
            Show all sequences for reference 1
  AUTHORS   Andrews,C.D., Spreen,W.R., Mohri,H., Moss,L., Ford,S., Gettie,A.,
	    Russell-Lodrigue,K., Bohm,R.P., Cheng-Mayer,C., Hong,Z.,
	    Markowitz,M. and Ho,D.D.
  TITLE     Long-acting integrase inhibitor protects macaques from intrarectal
	    simian/human immunodeficiency virus
  JOURNAL   Science 343 (6175), 1151-1154 (2014)
  PUBMED    24594934
REFERENCE   2 (bases 1 to 882)
            Show all sequences for reference 2
  AUTHORS   Andrews,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2014) Ho Lab, Aaron Diamond AIDS Research Center,
	    455 First Ave, 7th Floor, New York, NY 10016, USA
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..882
		     /organism="Simian-Human immunodeficiency virus"
		     /mol_type="other RNA"
		     /isolate="IK98-D77"
		     /db_xref="taxon:57667"
		     /country="USA"
		     /collection_date="23-Jul-2013"
     CDS	     <1..882
		     /note="SHIV162P3 integrase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="AHW98951.1"
		     /db_xref="GI:612341182"
		     /translation="FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCH
		     QKGEAIHGQTNSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLL
		     KLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKN
		     QIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS
		     KFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKE
		     VDSSSHMEDTGEAREVA"
BASE COUNT	337 a	 135 c	  222 g    188 t
ORIGIN
       1 ttcttggaaa agatagagcc agcacaagaa gaacatgata aataccatag taatgtaaaa 
      61 gaattggtat tcaaatttgg attacccaga atagtggcca gacagatagt agacacctgt 
     121 gataaatgtc atcagaaagg agaggctata catgggcaga caaattcaga tctagggact 
     181 tggcaaatgg attgtaccca tctagaggga aaaataatca tagttgcagt acatgtagct 
     241 agtggattca tagaagcaga ggtaattcca caagagacag gaagacagac agcactattt 
     301 ctgttaaaat tggcaggcag atggcctatt acacatctac acacagataa tggtgctaac 
     361 tttgcttcgc aagaagtaaa gatggttgca tggtgggcag ggatagagca cacctttggg 
     421 gtaccataca atccacagag tcagggagta gtggaagcaa tgaatcacca cctgaaaaat 
     481 caaatagata gaatcaggga acaagcaaat tcagtagaaa ccatagtatt aatggcagtt 
     541 cattgcatga attttaaaag aaggggagga ataggggata tgactccagc agaaagatta 
     601 attaacatga tcactacaga acaagagata caatttcaac aatcaaaaaa ctcaaaattt 
     661 aaaaattttc gggtctatta cagagaaggc agagatcaac tgtggaaggg acccggtgag 
     721 ctattgtgga aaggggaagg agcagtcatc ttaaaggtag ggacagacat taaggtagta 
     781 cccagaagaa aggctaaaat tatcaaagat tatggaggag gaaaagaggt ggatagcagt 
     841 tcccacatgg aggataccgg agaggctaga gaggtggcat ag
//
last modified: Tue May 31 10:56 2022


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