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LOCUS KJ415295 882 bp RNA linear SYN 22-APR-2014
DEFINITION Simian-Human immunodeficiency virus isolate IK98-D77 integrase
gene, partial cds
ACCESSION KJ415295
VERSION KJ415295.1 GI:612341181
KEYWORDS .
SOURCE Simian-Human immunodeficiency virus
ORGANISM Simian-Human immunodeficiency virus Viruses; Retro-transcribing
viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Primate
lentivirus group; unclassified Primate lentivirus group
REFERENCE 1 (bases 1 to 882)
Show all sequences for reference 1
AUTHORS Andrews,C.D., Spreen,W.R., Mohri,H., Moss,L., Ford,S., Gettie,A.,
Russell-Lodrigue,K., Bohm,R.P., Cheng-Mayer,C., Hong,Z.,
Markowitz,M. and Ho,D.D.
TITLE Long-acting integrase inhibitor protects macaques from intrarectal
simian/human immunodeficiency virus
JOURNAL Science 343 (6175), 1151-1154 (2014)
PUBMED 24594934
REFERENCE 2 (bases 1 to 882)
Show all sequences for reference 2
AUTHORS Andrews,C.D.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2014) Ho Lab, Aaron Diamond AIDS Research Center,
455 First Ave, 7th Floor, New York, NY 10016, USA
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..882
/organism="Simian-Human immunodeficiency virus"
/mol_type="other RNA"
/isolate="IK98-D77"
/db_xref="taxon:57667"
/country="USA"
/collection_date="23-Jul-2013"
CDS <1..882
/note="SHIV162P3 integrase"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="AHW98951.1"
/db_xref="GI:612341182"
/translation="FLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCH
QKGEAIHGQTNSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLL
KLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKN
QIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNS
KFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKE
VDSSSHMEDTGEAREVA"
BASE COUNT 337 a 135 c 222 g 188 t
ORIGIN
1 ttcttggaaa agatagagcc agcacaagaa gaacatgata aataccatag taatgtaaaa
61 gaattggtat tcaaatttgg attacccaga atagtggcca gacagatagt agacacctgt
121 gataaatgtc atcagaaagg agaggctata catgggcaga caaattcaga tctagggact
181 tggcaaatgg attgtaccca tctagaggga aaaataatca tagttgcagt acatgtagct
241 agtggattca tagaagcaga ggtaattcca caagagacag gaagacagac agcactattt
301 ctgttaaaat tggcaggcag atggcctatt acacatctac acacagataa tggtgctaac
361 tttgcttcgc aagaagtaaa gatggttgca tggtgggcag ggatagagca cacctttggg
421 gtaccataca atccacagag tcagggagta gtggaagcaa tgaatcacca cctgaaaaat
481 caaatagata gaatcaggga acaagcaaat tcagtagaaa ccatagtatt aatggcagtt
541 cattgcatga attttaaaag aaggggagga ataggggata tgactccagc agaaagatta
601 attaacatga tcactacaga acaagagata caatttcaac aatcaaaaaa ctcaaaattt
661 aaaaattttc gggtctatta cagagaaggc agagatcaac tgtggaaggg acccggtgag
721 ctattgtgga aaggggaagg agcagtcatc ttaaaggtag ggacagacat taaggtagta
781 cccagaagaa aggctaaaat tatcaaagat tatggaggag gaaaagaggt ggatagcagt
841 tcccacatgg aggataccgg agaggctaga gaggtggcat ag
//
last modified: Tue May 31 10:56 2022