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LOCUS KF292366 672 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate Q0426184 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292366
VERSION KF292366.1 GI:550076467
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 672)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 672)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..672
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Q0426184"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="26-Apr-2006"
/note="genotype: CRF01_AE"
gene <1..>672
/gene="pol"
CDS <1..>672
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83867.1"
/db_xref="GI:550076468"
/translation="MDGPKVKQWPLTEEKLKALTEICNKMEQEGKISKIGPENPYNTP
VFVIKKKDSTEWRKLIDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYYS
VPLDESFRKYTAFTIPSMNNETPGIRYQYNVLPMGWKGSPAIFQSSMTKILEPFRKKN
PEMVICQYVDDLYVGSDLEIGQHRIKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYE
LHPDRW"
BASE COUNT 265 a 107 c 143 g 156 t 1 other
ORIGIN
1 atggatggac cmaaggttaa acagtggcca ttgacagaag aaaaactaaa agcattaaca
61 gaaatttgta ataagatgga acaggaagga aaaatctcaa aaattgggcc tgagaatcca
121 tacaatactc cagtatttgt tataaagaaa aaggacagca ctgaatggag gaaattaata
181 gatttcagag agcttaataa aagaactcaa gacttttggg aagttcaatt aggaataccg
241 catccagcag ggttaaaaaa gaaaaaatca gtaacagtac tagatgtggg agatgcatat
301 tattcagttc ctttagatga aagctttaga aaatatactg cattcaccat acctagtatg
361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgcccatggg atggaaagga
421 tcaccagcaa tattccagag tagcatgaca aaaatcttag agccctttag aaagaaaaat
481 ccagaaatgg ttatctgtca atacgtggat gacttatatg taggatctga tttagaaata
541 gggcagcaca gaataaaaat agaggagcta agagctcatc tattgagctg gggatttact
601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat
661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022