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LOCUS	    KF292366		     672 bp    RNA     linear	VRL 23-OCT-2013
DEFINITION  HIV-1 isolate Q0426184 from Cambodia reverse transcriptase (pol)
	    gene, partial cds
ACCESSION   KF292366
VERSION     KF292366.1 GI:550076467
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 672)
            Show all sequences for reference 1
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Increased Risk of Q151M and K65R Mutations in Patients Failing
	    Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
  JOURNAL   PLoS ONE 8 (8), E73744 (2013)
  PUBMED    24015311
REFERENCE   2 (bases 1 to 672)
            Show all sequences for reference 2
  AUTHORS   Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
	    Nerrienet,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
	    Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT     ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
	    sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..672
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="Q0426184"
		     /isolation_source="plasma of HIV-1 infected and ARV
		     treated patient"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cambodia"
		     /collection_date="26-Apr-2006"
		     /note="genotype: CRF01_AE"
     gene	     <1..>672
		     /gene="pol"
     CDS	     <1..>672
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AGX83867.1"
		     /db_xref="GI:550076468"
		     /translation="MDGPKVKQWPLTEEKLKALTEICNKMEQEGKISKIGPENPYNTP
		     VFVIKKKDSTEWRKLIDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYYS
		     VPLDESFRKYTAFTIPSMNNETPGIRYQYNVLPMGWKGSPAIFQSSMTKILEPFRKKN
		     PEMVICQYVDDLYVGSDLEIGQHRIKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYE
		     LHPDRW"
BASE COUNT	265 a	 107 c	  143 g    156 t      1 other
ORIGIN
       1 atggatggac cmaaggttaa acagtggcca ttgacagaag aaaaactaaa agcattaaca 
      61 gaaatttgta ataagatgga acaggaagga aaaatctcaa aaattgggcc tgagaatcca 
     121 tacaatactc cagtatttgt tataaagaaa aaggacagca ctgaatggag gaaattaata 
     181 gatttcagag agcttaataa aagaactcaa gacttttggg aagttcaatt aggaataccg 
     241 catccagcag ggttaaaaaa gaaaaaatca gtaacagtac tagatgtggg agatgcatat 
     301 tattcagttc ctttagatga aagctttaga aaatatactg cattcaccat acctagtatg 
     361 aacaatgaga caccaggaat cagatatcag tacaatgtgc tgcccatggg atggaaagga 
     421 tcaccagcaa tattccagag tagcatgaca aaaatcttag agccctttag aaagaaaaat 
     481 ccagaaatgg ttatctgtca atacgtggat gacttatatg taggatctga tttagaaata 
     541 gggcagcaca gaataaaaat agaggagcta agagctcatc tattgagctg gggatttact 
     601 acaccagaca aaaagcatca gaaggaacct ccattccttt ggatgggata tgaactccat 
     661 cctgacagat gg
//
last modified: Tue May 31 10:56 2022


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