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LOCUS KF292365 651 bp RNA linear VRL 23-OCT-2013
DEFINITION HIV-1 isolate Q0328091 from Cambodia reverse transcriptase (pol)
gene, partial cds
ACCESSION KF292365
VERSION KF292365.1 GI:550076465
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 651)
Show all sequences for reference 1
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Increased Risk of Q151M and K65R Mutations in Patients Failing
Stavudine-Containing First-Line Antiretroviral Therapy in Cambodia
JOURNAL PLoS ONE 8 (8), E73744 (2013)
PUBMED 24015311
REFERENCE 2 (bases 1 to 651)
Show all sequences for reference 2
AUTHORS Nouhin,J., Madec,Y., Ngo-Giang-Huong,N., Ferradini,L. and
Nerrienet,E.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2013) HIV/Hepatitis Unit, Institut Pasteur du
Cambodge, 5, Monivong Blvd, Phnom Penh 12 201, Cambodia
COMMENT ##Assembly-Data-START## Sequencing Technology Sanger dideoxy
sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..651
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="Q0328091"
/isolation_source="plasma of HIV-1 infected and ARV
treated patient"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cambodia"
/collection_date="28-Mar-2006"
/note="genotype: CRF01_AE"
gene <1..>651
/gene="pol"
CDS <1..>651
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AGX83866.1"
/db_xref="GI:550076466"
/translation="QWPLTEEKIKALTEICEEMEKEGKISKIGPENPYNTPXFAIKRK
HGXKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPLDENF
RKYTAFTIPSTNNETTGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEIVICQ
YMDDLYVGSDLEIKQHRIKVEELRAHLASWGLTTPXEKYQKEPPFRWMGYXLHPDKW"
BASE COUNT 260 a 102 c 133 g 152 t 4 other
ORIGIN
1 cagtggccat tgacagaaga aaaaataaaa gcattaacag aaatttgtga agagatggaa
61 aaggaaggaa aaatttcaaa aattgggcct gaaaatccat ataatacccc artatttgct
121 ataaagagaa agcatggtrc caaatggagg aaattagtag atttcagaga gctcaataaa
181 agaactcagg atttttggga agttcaatta ggaataccgc atccagcagg tttaaaaaag
241 aataaatcag taacagtact agatgtggga gatgcatatt tttcagttcc tttagatgaa
301 aactttagaa agtatactgc attcaccata cctagtacaa acaatgagac aacaggaatc
361 agatatcagt acaatgtgct gccacaggga tggaaaggat caccagcaat attccagagt
421 agcatgacaa aaattttaga gccctttaga ataaaaaatc cagaaatagt tatctgtcaa
481 tacatggatg acttgtatgt aggatctgat ttagaaataa aacagcacag aataaaagta
541 gaagagctaa gagctcatct agcaagctgg gggcttacta caccagamga aaagtatcag
601 aaagaacctc cattccgttg gatgggatat gawctccatc ctgacaaatg g
//
last modified: Tue May 31 10:56 2022